Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0394 and Shewana3_0395 are separated by 148 nucleotides Shewana3_0395 and Shewana3_0396 are separated by 4 nucleotides Shewana3_0396 and Shewana3_0397 are separated by 98 nucleotides
Shewana3_0394: Shewana3_0394 - HAD family hydrolase (RefSeq), at 454,447 to 455,169
_0394
Shewana3_0395: Shewana3_0395 - HupE/UreJ protein (RefSeq), at 455,318 to 455,896
_0395
Shewana3_0396: Shewana3_0396 - putative transcriptional regulator (RefSeq), at 455,901 to 456,404
_0396
Shewana3_0397: Shewana3_0397 - hemerythrin HHE cation binding domain-containing protein (RefSeq), at 456,503 to 457,249
_0397
Position (kb) 455
456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 454.937 kb on - strand, within Shewana3_0394 at 455.110 kb on + strand at 455.217 kb on + strand at 455.218 kb on + strand at 455.331 kb on + strand at 455.420 kb on - strand, within Shewana3_0395 at 455.434 kb on - strand, within Shewana3_0395 at 455.465 kb on + strand, within Shewana3_0395 at 455.603 kb on + strand, within Shewana3_0395 at 455.730 kb on + strand, within Shewana3_0395 at 455.738 kb on + strand, within Shewana3_0395 at 455.740 kb on - strand, within Shewana3_0395 at 455.899 kb on + strand at 455.906 kb on - strand at 456.045 kb on - strand, within Shewana3_0396 at 456.203 kb on + strand, within Shewana3_0396 at 456.276 kb on + strand, within Shewana3_0396 at 456.276 kb on + strand, within Shewana3_0396 at 456.276 kb on + strand, within Shewana3_0396 at 456.283 kb on - strand, within Shewana3_0396 at 456.284 kb on - strand, within Shewana3_0396 at 456.334 kb on + strand, within Shewana3_0396 at 456.346 kb on + strand, within Shewana3_0396 at 456.586 kb on + strand, within Shewana3_0397 at 456.742 kb on - strand, within Shewana3_0397 at 457.058 kb on - strand, within Shewana3_0397 at 457.111 kb on - strand, within Shewana3_0397 at 457.177 kb on + strand at 457.193 kb on + strand at 457.235 kb on - strand at 457.395 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 454,937 - Shewana3_0394 0.68 +0.6 455,110 + -0.5 455,217 + +0.5 455,218 + -2.0 455,331 + +0.2 455,420 - Shewana3_0395 0.18 -0.8 455,434 - Shewana3_0395 0.20 -0.5 455,465 + Shewana3_0395 0.25 -3.2 455,603 + Shewana3_0395 0.49 -0.7 455,730 + Shewana3_0395 0.71 +0.5 455,738 + Shewana3_0395 0.73 +0.5 455,740 - Shewana3_0395 0.73 -0.5 455,899 + +0.3 455,906 - -2.1 456,045 - Shewana3_0396 0.29 -1.4 456,203 + Shewana3_0396 0.60 -1.2 456,276 + Shewana3_0396 0.74 +0.3 456,276 + Shewana3_0396 0.74 -1.8 456,276 + Shewana3_0396 0.74 -3.1 456,283 - Shewana3_0396 0.76 -2.7 456,284 - Shewana3_0396 0.76 -1.3 456,334 + Shewana3_0396 0.86 +0.7 456,346 + Shewana3_0396 0.88 -2.2 456,586 + Shewana3_0397 0.11 -1.7 456,742 - Shewana3_0397 0.32 -0.7 457,058 - Shewana3_0397 0.74 -2.1 457,111 - Shewana3_0397 0.81 -2.3 457,177 + +1.1 457,193 + +0.3 457,235 - +0.8 457,395 - +0.6
Or see this region's nucleotide sequence