Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0139 and Shewana3_0140 are separated by 25 nucleotides Shewana3_0140 and Shewana3_0141 are separated by 130 nucleotides
Shewana3_0139: Shewana3_0139 - methyltransferase type 12 (RefSeq), at 158,822 to 159,589
_0139
Shewana3_0140: Shewana3_0140 - peptidase M14, carboxypeptidase A (RefSeq), at 159,615 to 161,594
_0140
Shewana3_0141: Shewana3_0141 - hypothetical protein (RefSeq), at 161,725 to 162,843
_0141
Position (kb) 159
160
161
162 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 159.346 kb on + strand, within Shewana3_0139 at 159.380 kb on + strand, within Shewana3_0139 at 159.380 kb on + strand, within Shewana3_0139 at 159.413 kb on - strand, within Shewana3_0139 at 159.446 kb on - strand, within Shewana3_0139 at 159.572 kb on - strand at 159.682 kb on - strand at 159.721 kb on - strand at 159.822 kb on + strand, within Shewana3_0140 at 159.830 kb on - strand, within Shewana3_0140 at 159.901 kb on + strand, within Shewana3_0140 at 159.906 kb on + strand, within Shewana3_0140 at 159.914 kb on - strand, within Shewana3_0140 at 159.914 kb on - strand, within Shewana3_0140 at 159.914 kb on - strand, within Shewana3_0140 at 159.946 kb on + strand, within Shewana3_0140 at 159.965 kb on + strand, within Shewana3_0140 at 159.973 kb on - strand, within Shewana3_0140 at 159.973 kb on - strand, within Shewana3_0140 at 160.029 kb on - strand, within Shewana3_0140 at 160.079 kb on + strand, within Shewana3_0140 at 160.118 kb on - strand, within Shewana3_0140 at 160.205 kb on + strand, within Shewana3_0140 at 160.205 kb on + strand, within Shewana3_0140 at 160.214 kb on + strand, within Shewana3_0140 at 160.231 kb on + strand, within Shewana3_0140 at 160.292 kb on - strand, within Shewana3_0140 at 160.329 kb on - strand, within Shewana3_0140 at 160.426 kb on - strand, within Shewana3_0140 at 160.442 kb on + strand, within Shewana3_0140 at 160.450 kb on - strand, within Shewana3_0140 at 160.459 kb on - strand, within Shewana3_0140 at 160.536 kb on - strand, within Shewana3_0140 at 160.593 kb on + strand, within Shewana3_0140 at 160.641 kb on + strand, within Shewana3_0140 at 160.652 kb on + strand, within Shewana3_0140 at 160.687 kb on - strand, within Shewana3_0140 at 160.692 kb on + strand, within Shewana3_0140 at 160.698 kb on + strand, within Shewana3_0140 at 160.751 kb on + strand, within Shewana3_0140 at 161.219 kb on + strand, within Shewana3_0140 at 161.286 kb on + strand, within Shewana3_0140 at 161.433 kb on + strand at 161.433 kb on + strand at 161.493 kb on - strand at 161.678 kb on - strand at 161.726 kb on + strand at 161.795 kb on + strand at 161.847 kb on - strand, within Shewana3_0141 at 161.938 kb on + strand, within Shewana3_0141 at 162.327 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.434 kb on - strand, within Shewana3_0141 at 162.434 kb on - strand, within Shewana3_0141 at 162.526 kb on - strand, within Shewana3_0141 at 162.589 kb on + strand, within Shewana3_0141
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 159,346 + Shewana3_0139 0.68 +0.6 159,380 + Shewana3_0139 0.73 +0.3 159,380 + Shewana3_0139 0.73 +0.4 159,413 - Shewana3_0139 0.77 -1.5 159,446 - Shewana3_0139 0.81 +0.8 159,572 - -1.8 159,682 - -2.2 159,721 - +0.3 159,822 + Shewana3_0140 0.10 +1.8 159,830 - Shewana3_0140 0.11 -0.7 159,901 + Shewana3_0140 0.14 +0.6 159,906 + Shewana3_0140 0.15 +0.3 159,914 - Shewana3_0140 0.15 +1.1 159,914 - Shewana3_0140 0.15 +0.1 159,914 - Shewana3_0140 0.15 -1.7 159,946 + Shewana3_0140 0.17 -1.9 159,965 + Shewana3_0140 0.18 +0.3 159,973 - Shewana3_0140 0.18 +0.8 159,973 - Shewana3_0140 0.18 -2.4 160,029 - Shewana3_0140 0.21 -0.8 160,079 + Shewana3_0140 0.23 -1.8 160,118 - Shewana3_0140 0.25 +0.6 160,205 + Shewana3_0140 0.30 -0.5 160,205 + Shewana3_0140 0.30 +0.4 160,214 + Shewana3_0140 0.30 +0.4 160,231 + Shewana3_0140 0.31 -0.0 160,292 - Shewana3_0140 0.34 +1.2 160,329 - Shewana3_0140 0.36 -0.5 160,426 - Shewana3_0140 0.41 +0.8 160,442 + Shewana3_0140 0.42 +0.5 160,450 - Shewana3_0140 0.42 +0.4 160,459 - Shewana3_0140 0.43 -0.7 160,536 - Shewana3_0140 0.47 -1.0 160,593 + Shewana3_0140 0.49 +0.3 160,641 + Shewana3_0140 0.52 +0.8 160,652 + Shewana3_0140 0.52 +0.0 160,687 - Shewana3_0140 0.54 +0.2 160,692 + Shewana3_0140 0.54 +0.6 160,698 + Shewana3_0140 0.55 -3.4 160,751 + Shewana3_0140 0.57 +0.0 161,219 + Shewana3_0140 0.81 +0.6 161,286 + Shewana3_0140 0.84 +0.1 161,433 + -1.9 161,433 + +0.9 161,493 - -0.1 161,678 - +0.1 161,726 + +0.6 161,795 + -0.0 161,847 - Shewana3_0141 0.11 +0.3 161,938 + Shewana3_0141 0.19 -3.9 162,327 + Shewana3_0141 0.54 +0.3 162,426 + Shewana3_0141 0.63 -1.9 162,426 + Shewana3_0141 0.63 -4.8 162,426 + Shewana3_0141 0.63 +0.9 162,434 - Shewana3_0141 0.63 +0.5 162,434 - Shewana3_0141 0.63 -0.3 162,526 - Shewana3_0141 0.72 +0.4 162,589 + Shewana3_0141 0.77 +0.2
Or see this region's nucleotide sequence