Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4300 and Shewana3_4301 are separated by 95 nucleotides Shewana3_4301 and Shewana3_4302 are separated by 126 nucleotides
Shewana3_4300: Shewana3_4300 - CzcA family heavy metal efflux protein (RefSeq), at 183,606 to 186,752
_4300
Shewana3_4301: Shewana3_4301 - hypothetical protein (RefSeq), at 186,848 to 187,279
_4301
Shewana3_4302: Shewana3_4302 - heavy metal translocating P-type ATPase (RefSeq), at 187,406 to 189,853
_4302
Position (kb) 186
187
188 Strain fitness (log2 ratio) -2
-1
0
1 at 185.989 kb on + strand, within Shewana3_4300 at 185.997 kb on - strand, within Shewana3_4300 at 186.311 kb on - strand, within Shewana3_4300 at 186.337 kb on - strand, within Shewana3_4300 at 186.516 kb on - strand at 186.558 kb on + strand at 186.768 kb on + strand at 186.811 kb on - strand at 186.825 kb on + strand at 186.832 kb on + strand at 187.154 kb on + strand, within Shewana3_4301 at 187.609 kb on - strand at 187.691 kb on - strand, within Shewana3_4302 at 187.691 kb on - strand, within Shewana3_4302 at 187.763 kb on + strand, within Shewana3_4302 at 187.786 kb on + strand, within Shewana3_4302 at 187.836 kb on + strand, within Shewana3_4302 at 187.931 kb on + strand, within Shewana3_4302 at 187.967 kb on + strand, within Shewana3_4302 at 187.969 kb on + strand, within Shewana3_4302 at 188.241 kb on + strand, within Shewana3_4302
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 185,989 + Shewana3_4300 0.76 -0.6 185,997 - Shewana3_4300 0.76 +0.9 186,311 - Shewana3_4300 0.86 -2.3 186,337 - Shewana3_4300 0.87 -1.3 186,516 - -0.3 186,558 + -2.0 186,768 + +0.0 186,811 - -2.1 186,825 + +0.1 186,832 + +0.4 187,154 + Shewana3_4301 0.71 -1.8 187,609 - +0.0 187,691 - Shewana3_4302 0.12 +0.2 187,691 - Shewana3_4302 0.12 +0.5 187,763 + Shewana3_4302 0.15 -2.1 187,786 + Shewana3_4302 0.16 +0.4 187,836 + Shewana3_4302 0.18 +0.1 187,931 + Shewana3_4302 0.21 +0.3 187,967 + Shewana3_4302 0.23 -1.8 187,969 + Shewana3_4302 0.23 -0.0 188,241 + Shewana3_4302 0.34 +0.4
Or see this region's nucleotide sequence