Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4284 and Shewana3_4285 are separated by 274 nucleotides Shewana3_4285 and Shewana3_4286 are separated by 136 nucleotides Shewana3_4286 and Shewana3_4287 overlap by 4 nucleotides
Shewana3_4284: Shewana3_4284 - integrase catalytic subunit (RefSeq), at 167,962 to 168,783
_4284
Shewana3_4285: Shewana3_4285 - hypothetical protein (RefSeq), at 169,058 to 169,498
_4285
Shewana3_4286: Shewana3_4286 - hypothetical protein (RefSeq), at 169,635 to 170,150
_4286
Shewana3_4287: Shewana3_4287 - CopA family copper resistance protein (RefSeq), at 170,147 to 172,075
_4287
Position (kb) 169
170
171 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 168.644 kb on - strand, within Shewana3_4284 at 168.693 kb on - strand, within Shewana3_4284 at 168.693 kb on - strand, within Shewana3_4284 at 168.695 kb on + strand, within Shewana3_4284 at 168.810 kb on - strand at 168.887 kb on + strand at 168.913 kb on + strand at 168.913 kb on + strand at 168.966 kb on + strand at 168.973 kb on + strand at 168.973 kb on + strand at 168.973 kb on + strand at 168.981 kb on - strand at 168.981 kb on - strand at 169.098 kb on + strand at 169.276 kb on + strand, within Shewana3_4285 at 169.644 kb on + strand at 169.752 kb on - strand, within Shewana3_4286 at 169.789 kb on + strand, within Shewana3_4286 at 169.864 kb on + strand, within Shewana3_4286 at 169.874 kb on + strand, within Shewana3_4286 at 170.128 kb on + strand at 170.136 kb on - strand at 170.222 kb on + strand at 170.533 kb on - strand, within Shewana3_4287 at 170.698 kb on - strand, within Shewana3_4287 at 170.704 kb on - strand, within Shewana3_4287 at 170.984 kb on + strand, within Shewana3_4287 at 170.985 kb on + strand, within Shewana3_4287 at 170.996 kb on + strand, within Shewana3_4287
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 168,644 - Shewana3_4284 0.83 +0.5 168,693 - Shewana3_4284 0.89 +1.5 168,693 - Shewana3_4284 0.89 +0.6 168,695 + Shewana3_4284 0.89 +0.2 168,810 - -0.2 168,887 + +0.1 168,913 + -1.9 168,913 + -0.1 168,966 + +0.4 168,973 + +0.3 168,973 + -1.0 168,973 + -0.1 168,981 - +0.6 168,981 - +0.1 169,098 + +0.5 169,276 + Shewana3_4285 0.49 -1.1 169,644 + -3.8 169,752 - Shewana3_4286 0.23 -0.4 169,789 + Shewana3_4286 0.30 +0.9 169,864 + Shewana3_4286 0.44 +0.5 169,874 + Shewana3_4286 0.46 +0.1 170,128 + +0.2 170,136 - +0.9 170,222 + +0.4 170,533 - Shewana3_4287 0.20 -2.6 170,698 - Shewana3_4287 0.29 +0.4 170,704 - Shewana3_4287 0.29 -0.6 170,984 + Shewana3_4287 0.43 +0.3 170,985 + Shewana3_4287 0.43 +0.0 170,996 + Shewana3_4287 0.44 -0.4
Or see this region's nucleotide sequence