Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4199 and Shewana3_4200 are separated by 189 nucleotides Shewana3_4200 and Shewana3_4201 are separated by 223 nucleotides
Shewana3_4199: Shewana3_4199 - hypothetical protein (RefSeq), at 61,082 to 62,101
_4199
Shewana3_4200: Shewana3_4200 - hypothetical protein (RefSeq), at 62,291 to 63,763
_4200
Shewana3_4201: Shewana3_4201 - ATPase (RefSeq), at 63,987 to 64,961
_4201
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1 at 61.299 kb on + strand, within Shewana3_4199 at 61.618 kb on + strand, within Shewana3_4199 at 61.618 kb on + strand, within Shewana3_4199 at 61.618 kb on + strand, within Shewana3_4199 at 61.626 kb on - strand, within Shewana3_4199 at 61.626 kb on - strand, within Shewana3_4199 at 61.626 kb on - strand, within Shewana3_4199 at 61.643 kb on - strand, within Shewana3_4199 at 61.662 kb on - strand, within Shewana3_4199 at 61.662 kb on - strand, within Shewana3_4199 at 62.017 kb on - strand at 62.104 kb on - strand at 62.149 kb on - strand at 62.288 kb on - strand at 62.352 kb on - strand at 62.472 kb on - strand, within Shewana3_4200 at 62.589 kb on - strand, within Shewana3_4200 at 62.589 kb on - strand, within Shewana3_4200 at 62.599 kb on - strand, within Shewana3_4200 at 62.990 kb on + strand, within Shewana3_4200 at 63.011 kb on + strand, within Shewana3_4200 at 63.011 kb on + strand, within Shewana3_4200 at 63.029 kb on - strand, within Shewana3_4200 at 63.029 kb on - strand, within Shewana3_4200 at 63.090 kb on + strand, within Shewana3_4200 at 63.154 kb on - strand, within Shewana3_4200 at 63.169 kb on + strand, within Shewana3_4200 at 63.237 kb on + strand, within Shewana3_4200 at 63.266 kb on + strand, within Shewana3_4200 at 63.273 kb on + strand, within Shewana3_4200 at 63.370 kb on + strand, within Shewana3_4200 at 63.370 kb on + strand, within Shewana3_4200 at 63.370 kb on + strand, within Shewana3_4200 at 63.370 kb on + strand, within Shewana3_4200 at 63.370 kb on + strand, within Shewana3_4200 at 63.370 kb on + strand, within Shewana3_4200 at 63.378 kb on - strand, within Shewana3_4200 at 63.453 kb on - strand, within Shewana3_4200 at 63.678 kb on + strand at 63.678 kb on + strand at 63.686 kb on - strand at 63.686 kb on - strand at 63.843 kb on + strand at 63.843 kb on - strand at 63.956 kb on - strand at 63.970 kb on - strand at 64.011 kb on - strand at 64.049 kb on - strand at 64.073 kb on - strand at 64.281 kb on - strand, within Shewana3_4201 at 64.543 kb on - strand, within Shewana3_4201 at 64.591 kb on + strand, within Shewana3_4201 at 64.599 kb on - strand, within Shewana3_4201 at 64.690 kb on - strand, within Shewana3_4201 at 64.700 kb on - strand, within Shewana3_4201
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 61,299 + Shewana3_4199 0.21 +0.9 61,618 + Shewana3_4199 0.53 +0.3 61,618 + Shewana3_4199 0.53 -1.9 61,618 + Shewana3_4199 0.53 -0.2 61,626 - Shewana3_4199 0.53 +0.5 61,626 - Shewana3_4199 0.53 +0.3 61,626 - Shewana3_4199 0.53 +0.6 61,643 - Shewana3_4199 0.55 -0.0 61,662 - Shewana3_4199 0.57 +0.3 61,662 - Shewana3_4199 0.57 +0.9 62,017 - +0.4 62,104 - +0.3 62,149 - +0.5 62,288 - +0.9 62,352 - +0.1 62,472 - Shewana3_4200 0.12 +0.3 62,589 - Shewana3_4200 0.20 +0.2 62,589 - Shewana3_4200 0.20 +0.4 62,599 - Shewana3_4200 0.21 +0.4 62,990 + Shewana3_4200 0.47 +0.5 63,011 + Shewana3_4200 0.49 -0.3 63,011 + Shewana3_4200 0.49 +0.1 63,029 - Shewana3_4200 0.50 +0.6 63,029 - Shewana3_4200 0.50 +1.1 63,090 + Shewana3_4200 0.54 -2.7 63,154 - Shewana3_4200 0.59 -0.7 63,169 + Shewana3_4200 0.60 +1.5 63,237 + Shewana3_4200 0.64 -2.3 63,266 + Shewana3_4200 0.66 +0.6 63,273 + Shewana3_4200 0.67 +0.5 63,370 + Shewana3_4200 0.73 -0.5 63,370 + Shewana3_4200 0.73 -2.3 63,370 + Shewana3_4200 0.73 -2.4 63,370 + Shewana3_4200 0.73 +0.1 63,370 + Shewana3_4200 0.73 +0.4 63,370 + Shewana3_4200 0.73 +1.7 63,378 - Shewana3_4200 0.74 +1.3 63,453 - Shewana3_4200 0.79 -0.8 63,678 + +0.4 63,678 + +0.3 63,686 - -2.0 63,686 - +1.1 63,843 + -0.0 63,843 - -2.2 63,956 - +0.9 63,970 - -2.1 64,011 - +0.1 64,049 - -0.3 64,073 - -2.3 64,281 - Shewana3_4201 0.30 -1.1 64,543 - Shewana3_4201 0.57 +0.7 64,591 + Shewana3_4201 0.62 +0.1 64,599 - Shewana3_4201 0.63 +0.4 64,690 - Shewana3_4201 0.72 +1.1 64,700 - Shewana3_4201 0.73 -0.4
Or see this region's nucleotide sequence