Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3389 and Shew_3390 are separated by 76 nucleotides Shew_3390 and Shew_3391 are separated by 443 nucleotides Shew_3391 and Shew_3392 are separated by 66 nucleotides
Shew_3389: Shew_3389 - hypothetical protein (RefSeq), at 4,038,577 to 4,039,332
_3389
Shew_3390: Shew_3390 - uridine phosphorylase (RefSeq), at 4,039,409 to 4,040,167
_3390
Shew_3391: Shew_3391 - hypothetical protein (RefSeq), at 4,040,611 to 4,040,826
_3391
Shew_3392: Shew_3392 - ornithine decarboxylase (RefSeq), at 4,040,893 to 4,042,068
_3392
Position (kb) 4039
4040
4041 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4038.617 kb on - strand at 4038.969 kb on - strand, within Shew_3389 at 4039.229 kb on - strand, within Shew_3389 at 4039.292 kb on - strand at 4039.307 kb on - strand at 4039.407 kb on + strand at 4039.681 kb on - strand, within Shew_3390 at 4039.871 kb on - strand, within Shew_3390 at 4040.113 kb on + strand at 4040.121 kb on - strand at 4040.151 kb on - strand at 4040.248 kb on - strand at 4040.387 kb on - strand at 4040.605 kb on + strand at 4040.605 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 4,038,617 - +0.1 4,038,969 - Shew_3389 0.52 +0.4 4,039,229 - Shew_3389 0.86 +0.9 4,039,292 - +0.9 4,039,307 - +0.8 4,039,407 + +0.2 4,039,681 - Shew_3390 0.36 +0.4 4,039,871 - Shew_3390 0.61 -0.8 4,040,113 + +2.8 4,040,121 - +0.2 4,040,151 - -3.4 4,040,248 - +2.4 4,040,387 - -0.3 4,040,605 + -1.0 4,040,605 + +0.0
Or see this region's nucleotide sequence