Strain Fitness in Shewanella loihica PV-4 around Shew_2934

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2932 and Shew_2933 are separated by 127 nucleotidesShew_2933 and Shew_2934 overlap by 1 nucleotidesShew_2934 and Shew_2935 are separated by 77 nucleotides Shew_2932: Shew_2932 - nicotinate (nicotinamide) nucleotide adenylyltransferase (RefSeq), at 3,472,124 to 3,472,765 _2932 Shew_2933: Shew_2933 - iojap-like protein (RefSeq), at 3,472,893 to 3,473,240 _2933 Shew_2934: Shew_2934 - SPOUT methyltransferase superfamily protein (RefSeq), at 3,473,240 to 3,473,710 _2934 Shew_2935: Shew_2935 - peptidoglycan glycosyltransferase (RefSeq), at 3,473,788 to 3,475,671 _2935 Position (kb) 3473 3474Strain fitness (log2 ratio) -2 -1 0 1at 3473.325 kb on + strand, within Shew_2934

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
3,473,325 + Shew_2934 0.18 -2.1

Or see this region's nucleotide sequence