Strain Fitness in Shewanella loihica PV-4 around Shew_1699

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1698 and Shew_1699 are separated by 60 nucleotidesShew_1699 and Shew_1700 are separated by 77 nucleotidesShew_1700 and Shew_1701 are separated by 48 nucleotides Shew_1698: Shew_1698 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,951,473 to 1,953,731 _1698 Shew_1699: Shew_1699 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 1,953,792 to 1,955,444 _1699 Shew_1700: Shew_1700 - phosphate ABC transporter, ATPase subunit (RefSeq), at 1,955,522 to 1,956,340 _1700 Shew_1701: Shew_1701 - transcriptional regulator PhoU (RefSeq), at 1,956,389 to 1,957,090 _1701 Position (kb) 1953 1954 1955 1956Strain fitness (log2 ratio) -1 0 1at 1953.488 kb on + strand, within Shew_1698at 1955.377 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,953,488 + Shew_1698 0.89 -0.2
1,955,377 + +1.2

Or see this region's nucleotide sequence