Strain Fitness in Shewanella loihica PV-4 around Shew_1670

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1669 and Shew_1670 are separated by 15 nucleotidesShew_1670 and Shew_1671 overlap by 1 nucleotides Shew_1669: Shew_1669 - butyryl-CoA dehydrogenase (RefSeq), at 1,918,934 to 1,920,091 _1669 Shew_1670: Shew_1670 - enoyl-CoA hydratase (RefSeq), at 1,920,107 to 1,920,880 _1670 Shew_1671: Shew_1671 - enoyl-CoA hydratase/isomerase (RefSeq), at 1,920,880 to 1,922,010 _1671 Position (kb) 1920 1921Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1919.184 kb on + strand, within Shew_1669at 1919.291 kb on + strand, within Shew_1669at 1919.299 kb on - strand, within Shew_1669at 1919.352 kb on - strand, within Shew_1669at 1919.371 kb on - strand, within Shew_1669at 1919.681 kb on - strand, within Shew_1669at 1919.720 kb on - strand, within Shew_1669at 1920.249 kb on + strand, within Shew_1670at 1920.249 kb on + strand, within Shew_1670at 1920.533 kb on + strand, within Shew_1670at 1920.541 kb on - strand, within Shew_1670at 1920.627 kb on - strand, within Shew_1670at 1920.876 kb on + strandat 1921.113 kb on + strand, within Shew_1671at 1921.789 kb on - strand, within Shew_1671

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,919,184 + Shew_1669 0.22 +1.5
1,919,291 + Shew_1669 0.31 +1.2
1,919,299 - Shew_1669 0.32 +2.0
1,919,352 - Shew_1669 0.36 +2.7
1,919,371 - Shew_1669 0.38 +1.3
1,919,681 - Shew_1669 0.65 +1.2
1,919,720 - Shew_1669 0.68 +1.8
1,920,249 + Shew_1670 0.18 +1.4
1,920,249 + Shew_1670 0.18 +0.3
1,920,533 + Shew_1670 0.55 -0.4
1,920,541 - Shew_1670 0.56 -0.6
1,920,627 - Shew_1670 0.67 -2.0
1,920,876 + +0.1
1,921,113 + Shew_1671 0.21 -3.6
1,921,789 - Shew_1671 0.80 -5.5

Or see this region's nucleotide sequence