Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1325 and Shew_1326 are separated by 9 nucleotides Shew_1326 and Shew_1327 are separated by 18 nucleotides Shew_1327 and Shew_1328 are separated by 84 nucleotides Shew_1328 and Shew_1329 are separated by 0 nucleotides
Shew_1325: Shew_1325 - acetyltransferase-like protein (RefSeq), at 1,537,721 to 1,538,287
_1325
Shew_1326: Shew_1326 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,538,297 to 1,539,058
_1326
Shew_1327: Shew_1327 - hypothetical protein (RefSeq), at 1,539,077 to 1,539,310
_1327
Shew_1328: Shew_1328 - acylneuraminate cytidylyltransferase (RefSeq), at 1,539,395 to 1,540,132
_1328
Shew_1329: Shew_1329 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 1,540,133 to 1,541,209
_1329
Position (kb) 1539
1540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1538.177 kb on - strand, within Shew_1325 at 1538.245 kb on + strand at 1538.409 kb on - strand, within Shew_1326 at 1538.796 kb on - strand, within Shew_1326 at 1538.853 kb on - strand, within Shew_1326 at 1538.872 kb on - strand, within Shew_1326 at 1539.131 kb on - strand, within Shew_1327 at 1539.167 kb on - strand, within Shew_1327 at 1539.209 kb on - strand, within Shew_1327 at 1539.265 kb on + strand, within Shew_1327 at 1539.277 kb on + strand, within Shew_1327 at 1539.402 kb on + strand at 1539.402 kb on + strand at 1539.410 kb on - strand at 1539.529 kb on + strand, within Shew_1328 at 1539.578 kb on + strand, within Shew_1328 at 1539.810 kb on - strand, within Shew_1328 at 1539.820 kb on - strand, within Shew_1328 at 1539.836 kb on - strand, within Shew_1328 at 1540.004 kb on + strand, within Shew_1328 at 1540.155 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,538,177 - Shew_1325 0.80 +2.3 1,538,245 + +2.7 1,538,409 - Shew_1326 0.15 +1.6 1,538,796 - Shew_1326 0.65 +1.4 1,538,853 - Shew_1326 0.73 +1.3 1,538,872 - Shew_1326 0.75 +2.3 1,539,131 - Shew_1327 0.23 +2.1 1,539,167 - Shew_1327 0.38 +2.8 1,539,209 - Shew_1327 0.56 +2.3 1,539,265 + Shew_1327 0.80 +0.6 1,539,277 + Shew_1327 0.85 +2.0 1,539,402 + +0.1 1,539,402 + -3.0 1,539,410 - +0.1 1,539,529 + Shew_1328 0.18 +2.9 1,539,578 + Shew_1328 0.25 +3.9 1,539,810 - Shew_1328 0.56 +1.8 1,539,820 - Shew_1328 0.58 +1.7 1,539,836 - Shew_1328 0.60 +1.0 1,540,004 + Shew_1328 0.83 +2.0 1,540,155 + +2.7
Or see this region's nucleotide sequence