Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0828 and Shew_0829 are separated by 100 nucleotides Shew_0829 and Shew_0830 are separated by 13 nucleotides Shew_0830 and Shew_0831 are separated by 40 nucleotides Shew_0831 and Shew_0832 are separated by 358 nucleotides
Shew_0828: Shew_0828 - LysR family transcriptional regulator (RefSeq), at 950,712 to 951,605
_0828
Shew_0829: Shew_0829 - LrgA family protein (RefSeq), at 951,706 to 952,125
_0829
Shew_0830: Shew_0830 - LrgB family protein (RefSeq), at 952,139 to 952,828
_0830
Shew_0831: Shew_0831 - CBS domain-containing protein (RefSeq), at 952,869 to 953,288
_0831
Shew_0832: Shew_0832 - alkaline phosphatase (RefSeq), at 953,647 to 955,419
_0832
Position (kb) 952
953 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 951.502 kb on + strand, within Shew_0828 at 951.549 kb on + strand at 951.987 kb on + strand, within Shew_0829 at 952.010 kb on + strand, within Shew_0829 at 952.010 kb on - strand, within Shew_0829 at 952.018 kb on - strand, within Shew_0829 at 952.196 kb on - strand at 952.196 kb on - strand at 952.435 kb on - strand, within Shew_0830 at 952.501 kb on + strand, within Shew_0830 at 952.763 kb on + strand at 952.903 kb on - strand at 952.903 kb on - strand at 953.524 kb on + strand at 953.605 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 951,502 + Shew_0828 0.88 -3.3 951,549 + -1.6 951,987 + Shew_0829 0.67 -2.5 952,010 + Shew_0829 0.72 -2.1 952,010 - Shew_0829 0.72 -1.2 952,018 - Shew_0829 0.74 -1.2 952,196 - -1.2 952,196 - -3.3 952,435 - Shew_0830 0.43 -1.4 952,501 + Shew_0830 0.52 -1.2 952,763 + -0.7 952,903 - -0.2 952,903 - -0.4 953,524 + +0.4 953,605 - -1.2
Or see this region's nucleotide sequence