Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0629 and Shew_0630 are separated by 2 nucleotides Shew_0630 and Shew_0631 are separated by 3 nucleotides Shew_0631 and Shew_0632 are separated by 86 nucleotides
Shew_0629: Shew_0629 - extracellular solute-binding protein (RefSeq), at 715,941 to 716,714
_0629
Shew_0630: Shew_0630 - hypothetical protein (RefSeq), at 716,717 to 717,529
_0630
Shew_0631: Shew_0631 - AFG1 family ATPase (RefSeq), at 717,533 to 718,699
_0631
Shew_0632: Shew_0632 - OmpA/MotB domain-containing protein (RefSeq), at 718,786 to 720,231
_0632
Position (kb) 717
718
719 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 716.648 kb on + strand at 717.235 kb on + strand, within Shew_0630 at 717.271 kb on + strand, within Shew_0630 at 717.492 kb on - strand at 717.531 kb on + strand at 717.636 kb on + strand at 717.636 kb on + strand at 717.636 kb on + strand at 717.644 kb on - strand at 717.644 kb on - strand at 718.228 kb on + strand, within Shew_0631 at 718.323 kb on + strand, within Shew_0631 at 718.383 kb on + strand, within Shew_0631 at 718.383 kb on + strand, within Shew_0631 at 718.543 kb on + strand, within Shew_0631 at 718.551 kb on - strand, within Shew_0631 at 718.849 kb on - strand at 718.897 kb on - strand at 718.897 kb on - strand at 718.943 kb on + strand, within Shew_0632 at 719.000 kb on - strand, within Shew_0632 at 719.214 kb on + strand, within Shew_0632 at 719.214 kb on + strand, within Shew_0632 at 719.214 kb on + strand, within Shew_0632 at 719.222 kb on - strand, within Shew_0632 at 719.343 kb on - strand, within Shew_0632 at 719.388 kb on - strand, within Shew_0632 at 719.432 kb on + strand, within Shew_0632 at 719.440 kb on - strand, within Shew_0632 at 719.462 kb on + strand, within Shew_0632 at 719.506 kb on - strand, within Shew_0632 at 719.519 kb on + strand, within Shew_0632 at 719.521 kb on - strand, within Shew_0632
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 716,648 + -2.3 717,235 + Shew_0630 0.64 -1.5 717,271 + Shew_0630 0.68 -0.2 717,492 - -1.2 717,531 + -0.0 717,636 + -0.9 717,636 + -1.2 717,636 + -1.3 717,644 - -1.6 717,644 - -1.6 718,228 + Shew_0631 0.60 -0.1 718,323 + Shew_0631 0.68 -1.4 718,383 + Shew_0631 0.73 -3.1 718,383 + Shew_0631 0.73 +0.1 718,543 + Shew_0631 0.87 -2.0 718,551 - Shew_0631 0.87 -0.5 718,849 - +0.8 718,897 - +1.0 718,897 - -0.1 718,943 + Shew_0632 0.11 -0.0 719,000 - Shew_0632 0.15 -0.2 719,214 + Shew_0632 0.30 +0.9 719,214 + Shew_0632 0.30 +0.5 719,214 + Shew_0632 0.30 +0.1 719,222 - Shew_0632 0.30 +0.3 719,343 - Shew_0632 0.39 -0.8 719,388 - Shew_0632 0.42 +0.2 719,432 + Shew_0632 0.45 -0.0 719,440 - Shew_0632 0.45 -0.1 719,462 + Shew_0632 0.47 -0.6 719,506 - Shew_0632 0.50 +0.9 719,519 + Shew_0632 0.51 +0.6 719,521 - Shew_0632 0.51 -0.4
Or see this region's nucleotide sequence