Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0616 and Shew_0617 are separated by 256 nucleotides Shew_0617 and Shew_0618 are separated by 24 nucleotides Shew_0618 and Shew_0619 are separated by 253 nucleotides
Shew_0616: Shew_0616 - SH3 domain-containing protein (RefSeq), at 701,190 to 701,738
_0616
Shew_0617: Shew_0617 - phosphate transporter (RefSeq), at 701,995 to 703,263
_0617
Shew_0618: Shew_0618 - hypothetical protein (RefSeq), at 703,288 to 703,968
_0618
Shew_0619: Shew_0619 - adenylate cyclase (RefSeq), at 704,222 to 705,709
_0619
Position (kb) 701
702
703
704 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 701.245 kb on - strand, within Shew_0616 at 701.453 kb on - strand, within Shew_0616 at 701.476 kb on + strand, within Shew_0616 at 701.517 kb on + strand, within Shew_0616 at 701.633 kb on + strand, within Shew_0616 at 701.911 kb on - strand at 702.187 kb on - strand, within Shew_0617 at 702.928 kb on + strand, within Shew_0617 at 703.311 kb on - strand at 703.420 kb on - strand, within Shew_0618 at 703.524 kb on - strand, within Shew_0618 at 703.888 kb on + strand, within Shew_0618 at 704.030 kb on - strand at 704.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 701,245 - Shew_0616 0.10 +0.8 701,453 - Shew_0616 0.48 -0.1 701,476 + Shew_0616 0.52 +0.1 701,517 + Shew_0616 0.60 +1.6 701,633 + Shew_0616 0.81 +2.3 701,911 - -0.2 702,187 - Shew_0617 0.15 +0.4 702,928 + Shew_0617 0.74 +0.0 703,311 - +3.6 703,420 - Shew_0618 0.19 +7.1 703,524 - Shew_0618 0.35 +6.1 703,888 + Shew_0618 0.88 -0.6 704,030 - +4.0 704,030 - +2.6
Or see this region's nucleotide sequence