Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0449 and Shew_0450 are separated by 235 nucleotides Shew_0450 and Shew_0451 are separated by 24 nucleotides Shew_0451 and Shew_0452 are separated by 77 nucleotides
Shew_0449: Shew_0449 - ABC-3 protein (RefSeq), at 500,159 to 500,950
_0449
Shew_0450: Shew_0450 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq), at 501,186 to 501,920
_0450
Shew_0451: Shew_0451 - hypothetical protein (RefSeq), at 501,945 to 502,352
_0451
Shew_0452: Shew_0452 - diguanylate cyclase (RefSeq), at 502,430 to 503,401
_0452
Position (kb) 501
502 Strain fitness (log2 ratio) -2
-1
0
1 at 500.331 kb on - strand, within Shew_0449 at 500.575 kb on - strand, within Shew_0449 at 500.708 kb on - strand, within Shew_0449 at 500.902 kb on + strand at 501.451 kb on + strand, within Shew_0450 at 501.459 kb on - strand, within Shew_0450 at 501.462 kb on + strand, within Shew_0450 at 502.042 kb on + strand, within Shew_0451 at 502.225 kb on + strand, within Shew_0451 at 502.430 kb on + strand at 502.568 kb on + strand, within Shew_0452 at 502.916 kb on + strand, within Shew_0452
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 500,331 - Shew_0449 0.22 -0.5 500,575 - Shew_0449 0.53 +0.3 500,708 - Shew_0449 0.69 +0.4 500,902 + +0.4 501,451 + Shew_0450 0.36 +0.3 501,459 - Shew_0450 0.37 -0.3 501,462 + Shew_0450 0.38 +1.2 502,042 + Shew_0451 0.24 +0.2 502,225 + Shew_0451 0.69 -0.6 502,430 + +0.3 502,568 + Shew_0452 0.14 +0.3 502,916 + Shew_0452 0.50 -2.3
Or see this region's nucleotide sequence