Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0431 and Shew_0432 are separated by 285 nucleotides Shew_0432 and Shew_0433 are separated by 21 nucleotides Shew_0433 and Shew_0434 are separated by 92 nucleotides Shew_0434 and Shew_0435 are separated by 247 nucleotides
Shew_0431: Shew_0431 - hypothetical protein (RefSeq), at 483,467 to 483,877
_0431
Shew_0432: Shew_0432 - hypothetical protein (RefSeq), at 484,163 to 484,672
_0432
Shew_0433: Shew_0433 - hypothetical protein (RefSeq), at 484,694 to 485,083
_0433
Shew_0434: Shew_0434 - hypothetical protein (RefSeq), at 485,176 to 485,487
_0434
Shew_0435: Shew_0435 - hypothetical protein (RefSeq), at 485,735 to 486,256
_0435
Position (kb) 484
485
486 Strain fitness (log2 ratio) -2
-1
0
1
2 at 483.709 kb on + strand, within Shew_0431 at 483.777 kb on - strand, within Shew_0431 at 483.778 kb on + strand, within Shew_0431 at 483.909 kb on + strand at 484.111 kb on - strand at 484.237 kb on + strand, within Shew_0432 at 484.417 kb on + strand, within Shew_0432 at 484.585 kb on + strand, within Shew_0432 at 484.774 kb on + strand, within Shew_0433 at 484.781 kb on - strand, within Shew_0433 at 485.365 kb on + strand, within Shew_0434 at 485.406 kb on + strand, within Shew_0434 at 485.698 kb on - strand at 486.035 kb on - strand, within Shew_0435
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 483,709 + Shew_0431 0.59 -0.6 483,777 - Shew_0431 0.75 +2.1 483,778 + Shew_0431 0.76 +0.8 483,909 + +0.3 484,111 - +1.0 484,237 + Shew_0432 0.15 +0.5 484,417 + Shew_0432 0.50 +0.6 484,585 + Shew_0432 0.83 +0.0 484,774 + Shew_0433 0.21 +2.0 484,781 - Shew_0433 0.22 +0.5 485,365 + Shew_0434 0.61 -0.6 485,406 + Shew_0434 0.74 +0.5 485,698 - -2.2 486,035 - Shew_0435 0.57 -1.3
Or see this region's nucleotide sequence