Strain Fitness in Shewanella loihica PV-4 around Shew_0251

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0250 and Shew_0251 are separated by 377 nucleotidesShew_0251 and Shew_0252 are separated by 144 nucleotides Shew_0250: Shew_0250 - MerR family transcriptional regulator (RefSeq), at 268,605 to 269,783 _0250 Shew_0251: Shew_0251 - phage integrase family protein (RefSeq), at 270,161 to 270,757 _0251 Shew_0252: Shew_0252 - hypothetical protein (RefSeq), at 270,902 to 271,894 _0252 Position (kb) 270 271Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 269.180 kb on + strand, within Shew_0250at 269.334 kb on + strand, within Shew_0250at 269.413 kb on - strand, within Shew_0250at 269.423 kb on - strand, within Shew_0250at 269.423 kb on - strand, within Shew_0250at 269.600 kb on + strand, within Shew_0250at 269.600 kb on + strand, within Shew_0250at 269.608 kb on - strand, within Shew_0250at 269.608 kb on - strand, within Shew_0250at 269.619 kb on + strand, within Shew_0250at 269.708 kb on + strandat 269.794 kb on + strandat 269.827 kb on - strandat 269.834 kb on + strandat 269.834 kb on + strandat 269.852 kb on - strandat 269.899 kb on - strandat 269.986 kb on + strandat 270.053 kb on + strandat 270.065 kb on - strandat 270.095 kb on + strandat 270.275 kb on + strand, within Shew_0251at 270.283 kb on - strand, within Shew_0251at 270.295 kb on - strand, within Shew_0251at 270.332 kb on - strand, within Shew_0251at 270.353 kb on + strand, within Shew_0251at 270.446 kb on - strand, within Shew_0251at 270.511 kb on - strand, within Shew_0251at 270.620 kb on + strand, within Shew_0251at 270.723 kb on - strandat 270.734 kb on - strandat 270.802 kb on - strandat 270.808 kb on + strandat 270.816 kb on - strandat 270.845 kb on - strandat 270.874 kb on + strandat 270.908 kb on - strandat 270.955 kb on - strandat 270.955 kb on - strandat 271.000 kb on + strandat 271.015 kb on + strand, within Shew_0252at 271.068 kb on + strand, within Shew_0252at 271.069 kb on + strand, within Shew_0252at 271.132 kb on + strand, within Shew_0252at 271.140 kb on + strand, within Shew_0252at 271.188 kb on + strand, within Shew_0252at 271.196 kb on - strand, within Shew_0252at 271.204 kb on + strand, within Shew_0252at 271.209 kb on + strand, within Shew_0252at 271.209 kb on + strand, within Shew_0252at 271.209 kb on + strand, within Shew_0252at 271.212 kb on - strand, within Shew_0252at 271.217 kb on - strand, within Shew_0252at 271.217 kb on - strand, within Shew_0252at 271.231 kb on - strand, within Shew_0252at 271.303 kb on + strand, within Shew_0252at 271.320 kb on + strand, within Shew_0252at 271.338 kb on - strand, within Shew_0252at 271.464 kb on - strand, within Shew_0252at 271.510 kb on + strand, within Shew_0252at 271.518 kb on - strand, within Shew_0252at 271.518 kb on - strand, within Shew_0252at 271.518 kb on - strand, within Shew_0252at 271.518 kb on - strand, within Shew_0252at 271.518 kb on - strand, within Shew_0252at 271.518 kb on - strand, within Shew_0252at 271.564 kb on - strand, within Shew_0252at 271.604 kb on + strand, within Shew_0252at 271.612 kb on + strand, within Shew_0252at 271.657 kb on - strand, within Shew_0252

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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269,180 + Shew_0250 0.49 +0.2
269,334 + Shew_0250 0.62 +0.3
269,413 - Shew_0250 0.69 -1.2
269,423 - Shew_0250 0.69 +0.2
269,423 - Shew_0250 0.69 +0.6
269,600 + Shew_0250 0.84 +0.0
269,600 + Shew_0250 0.84 -0.0
269,608 - Shew_0250 0.85 +1.2
269,608 - Shew_0250 0.85 -0.8
269,619 + Shew_0250 0.86 +0.4
269,708 + -0.2
269,794 + +0.1
269,827 - +1.3
269,834 + -1.8
269,834 + -0.0
269,852 - -0.2
269,899 - +0.4
269,986 + +0.3
270,053 + +0.6
270,065 - -0.1
270,095 + +0.4
270,275 + Shew_0251 0.19 +0.2
270,283 - Shew_0251 0.20 -1.3
270,295 - Shew_0251 0.22 -2.9
270,332 - Shew_0251 0.29 -0.1
270,353 + Shew_0251 0.32 +0.4
270,446 - Shew_0251 0.48 -1.1
270,511 - Shew_0251 0.59 -0.0
270,620 + Shew_0251 0.77 -0.2
270,723 - +0.3
270,734 - +0.0
270,802 - -0.0
270,808 + +2.2
270,816 - -0.8
270,845 - -1.3
270,874 + +0.1
270,908 - -0.2
270,955 - +0.6
270,955 - +0.7
271,000 + +0.7
271,015 + Shew_0252 0.11 -1.2
271,068 + Shew_0252 0.17 +1.5
271,069 + Shew_0252 0.17 -0.2
271,132 + Shew_0252 0.23 +0.6
271,140 + Shew_0252 0.24 +0.6
271,188 + Shew_0252 0.29 +0.2
271,196 - Shew_0252 0.30 +0.2
271,204 + Shew_0252 0.30 -0.6
271,209 + Shew_0252 0.31 +0.7
271,209 + Shew_0252 0.31 +1.1
271,209 + Shew_0252 0.31 +0.3
271,212 - Shew_0252 0.31 -1.0
271,217 - Shew_0252 0.32 -0.1
271,217 - Shew_0252 0.32 +0.2
271,231 - Shew_0252 0.33 +0.2
271,303 + Shew_0252 0.40 +0.4
271,320 + Shew_0252 0.42 +0.5
271,338 - Shew_0252 0.44 +0.3
271,464 - Shew_0252 0.57 +0.6
271,510 + Shew_0252 0.61 +0.3
271,518 - Shew_0252 0.62 +0.6
271,518 - Shew_0252 0.62 +0.5
271,518 - Shew_0252 0.62 +0.8
271,518 - Shew_0252 0.62 +0.6
271,518 - Shew_0252 0.62 +0.4
271,518 - Shew_0252 0.62 -0.8
271,564 - Shew_0252 0.67 +0.6
271,604 + Shew_0252 0.71 +0.3
271,612 + Shew_0252 0.72 -1.8
271,657 - Shew_0252 0.76 +0.5

Or see this region's nucleotide sequence