Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0207 and Shew_0208 are separated by 184 nucleotides Shew_0208 and Shew_0209 overlap by 13 nucleotides Shew_0209 and Shew_0210 overlap by 4 nucleotides
Shew_0207: Shew_0207 - 1A family penicillin-binding protein (RefSeq), at 220,944 to 223,529
_0207
Shew_0208: Shew_0208 - type IV pilus assembly protein PilM (RefSeq), at 223,714 to 224,793
_0208
Shew_0209: Shew_0209 - fimbrial assembly family protein (RefSeq), at 224,781 to 225,362
_0209
Shew_0210: Shew_0210 - pilus assembly protein, PilO (RefSeq), at 225,359 to 225,982
_0210
Position (kb) 223
224
225 Strain fitness (log2 ratio) -2
-1
0
1
2 at 223.417 kb on - strand at 223.749 kb on - strand at 223.792 kb on - strand at 223.797 kb on + strand at 223.840 kb on - strand, within Shew_0208 at 223.845 kb on + strand, within Shew_0208 at 223.894 kb on + strand, within Shew_0208 at 223.902 kb on - strand, within Shew_0208 at 223.904 kb on + strand, within Shew_0208 at 223.912 kb on - strand, within Shew_0208 at 224.008 kb on - strand, within Shew_0208 at 224.020 kb on - strand, within Shew_0208 at 224.114 kb on + strand, within Shew_0208 at 224.123 kb on + strand, within Shew_0208 at 224.131 kb on - strand, within Shew_0208 at 224.288 kb on + strand, within Shew_0208 at 224.613 kb on + strand, within Shew_0208 at 224.687 kb on + strand at 224.756 kb on + strand at 224.761 kb on + strand at 224.761 kb on + strand at 224.761 kb on + strand at 224.761 kb on + strand at 224.761 kb on + strand at 224.764 kb on - strand at 224.764 kb on - strand at 224.764 kb on - strand at 224.764 kb on - strand at 224.769 kb on - strand at 224.769 kb on - strand at 224.769 kb on - strand at 224.769 kb on - strand at 224.777 kb on - strand at 225.076 kb on + strand, within Shew_0209 at 225.084 kb on - strand, within Shew_0209 at 225.424 kb on + strand, within Shew_0210 at 225.424 kb on + strand, within Shew_0210 at 225.432 kb on - strand, within Shew_0210 at 225.516 kb on - strand, within Shew_0210 at 225.516 kb on - strand, within Shew_0210 at 225.516 kb on - strand, within Shew_0210 at 225.702 kb on + strand, within Shew_0210 at 225.702 kb on + strand, within Shew_0210 at 225.702 kb on + strand, within Shew_0210 at 225.710 kb on - strand, within Shew_0210 at 225.710 kb on - strand, within Shew_0210
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 223,417 - -2.0 223,749 - -0.1 223,792 - -0.3 223,797 + +0.0 223,840 - Shew_0208 0.12 +0.3 223,845 + Shew_0208 0.12 +0.7 223,894 + Shew_0208 0.17 +0.3 223,902 - Shew_0208 0.17 +1.0 223,904 + Shew_0208 0.18 -1.3 223,912 - Shew_0208 0.18 +0.4 224,008 - Shew_0208 0.27 +0.3 224,020 - Shew_0208 0.28 +0.7 224,114 + Shew_0208 0.37 -0.1 224,123 + Shew_0208 0.38 +0.3 224,131 - Shew_0208 0.39 -1.3 224,288 + Shew_0208 0.53 +0.8 224,613 + Shew_0208 0.83 +0.8 224,687 + +0.8 224,756 + -0.9 224,761 + +0.7 224,761 + +0.5 224,761 + -0.0 224,761 + -0.6 224,761 + +0.3 224,764 - +0.1 224,764 - -0.7 224,764 - -1.7 224,764 - -0.5 224,769 - -0.2 224,769 - +1.9 224,769 - +0.0 224,769 - +0.3 224,777 - +0.6 225,076 + Shew_0209 0.51 +0.4 225,084 - Shew_0209 0.52 +0.1 225,424 + Shew_0210 0.10 -0.2 225,424 + Shew_0210 0.10 +0.5 225,432 - Shew_0210 0.12 -0.4 225,516 - Shew_0210 0.25 +0.2 225,516 - Shew_0210 0.25 -0.1 225,516 - Shew_0210 0.25 -0.2 225,702 + Shew_0210 0.55 -1.3 225,702 + Shew_0210 0.55 +0.8 225,702 + Shew_0210 0.55 +0.3 225,710 - Shew_0210 0.56 -0.0 225,710 - Shew_0210 0.56 +0.2
Or see this region's nucleotide sequence