Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0078 and Shew_0079 are separated by 203 nucleotides Shew_0079 and Shew_0080 are separated by 263 nucleotides
Shew_0078: Shew_0078 - ribokinase-like domain-containing protein (RefSeq), at 90,789 to 91,649
_0078
Shew_0079: Shew_0079 - TAP domain-containing protein (RefSeq), at 91,853 to 93,310
_0079
Shew_0080: Shew_0080 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 93,574 to 94,866
_0080
Position (kb) 91
92
93
94 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 90.921 kb on + strand, within Shew_0078 at 90.927 kb on + strand, within Shew_0078 at 90.932 kb on + strand, within Shew_0078 at 90.940 kb on - strand, within Shew_0078 at 90.940 kb on - strand, within Shew_0078 at 90.944 kb on + strand, within Shew_0078 at 90.962 kb on - strand, within Shew_0078 at 91.033 kb on + strand, within Shew_0078 at 91.216 kb on - strand, within Shew_0078 at 91.226 kb on - strand, within Shew_0078 at 91.461 kb on - strand, within Shew_0078 at 91.572 kb on - strand at 91.825 kb on + strand at 91.831 kb on + strand at 91.833 kb on - strand at 91.901 kb on - strand at 91.989 kb on + strand at 91.997 kb on - strand at 92.016 kb on - strand, within Shew_0079 at 92.152 kb on + strand, within Shew_0079 at 92.248 kb on - strand, within Shew_0079 at 92.248 kb on - strand, within Shew_0079 at 92.351 kb on + strand, within Shew_0079 at 92.573 kb on - strand, within Shew_0079 at 92.632 kb on + strand, within Shew_0079 at 92.816 kb on - strand, within Shew_0079 at 92.816 kb on - strand, within Shew_0079 at 92.870 kb on + strand, within Shew_0079 at 92.944 kb on - strand, within Shew_0079 at 92.950 kb on + strand, within Shew_0079 at 92.960 kb on + strand, within Shew_0079 at 92.968 kb on - strand, within Shew_0079 at 92.968 kb on - strand, within Shew_0079 at 93.149 kb on - strand, within Shew_0079 at 93.373 kb on + strand at 93.477 kb on + strand at 93.510 kb on - strand at 93.537 kb on + strand at 93.545 kb on - strand at 93.545 kb on - strand at 93.555 kb on - strand at 93.555 kb on - strand at 93.589 kb on - strand at 93.589 kb on - strand at 93.597 kb on + strand at 93.641 kb on - strand at 93.681 kb on + strand at 93.681 kb on + strand at 93.681 kb on + strand at 93.681 kb on + strand at 93.681 kb on + strand at 93.681 kb on + strand at 93.689 kb on - strand at 93.689 kb on - strand at 93.689 kb on - strand at 93.825 kb on + strand, within Shew_0080 at 93.955 kb on - strand, within Shew_0080 at 94.003 kb on - strand, within Shew_0080 at 94.014 kb on - strand, within Shew_0080 at 94.054 kb on + strand, within Shew_0080 at 94.145 kb on - strand, within Shew_0080 at 94.160 kb on + strand, within Shew_0080 at 94.168 kb on - strand, within Shew_0080 at 94.283 kb on - strand, within Shew_0080
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 90,921 + Shew_0078 0.15 -0.3 90,927 + Shew_0078 0.16 +0.3 90,932 + Shew_0078 0.17 -0.9 90,940 - Shew_0078 0.18 -0.6 90,940 - Shew_0078 0.18 +0.3 90,944 + Shew_0078 0.18 -0.1 90,962 - Shew_0078 0.20 -2.3 91,033 + Shew_0078 0.28 +0.2 91,216 - Shew_0078 0.50 -0.2 91,226 - Shew_0078 0.51 -0.4 91,461 - Shew_0078 0.78 +0.1 91,572 - +0.2 91,825 + +0.1 91,831 + +0.6 91,833 - -0.2 91,901 - +1.1 91,989 + +0.1 91,997 - +0.3 92,016 - Shew_0079 0.11 +0.3 92,152 + Shew_0079 0.21 -0.1 92,248 - Shew_0079 0.27 -1.9 92,248 - Shew_0079 0.27 +0.1 92,351 + Shew_0079 0.34 -0.8 92,573 - Shew_0079 0.49 +0.2 92,632 + Shew_0079 0.53 +0.6 92,816 - Shew_0079 0.66 -0.8 92,816 - Shew_0079 0.66 +0.3 92,870 + Shew_0079 0.70 +0.2 92,944 - Shew_0079 0.75 +0.8 92,950 + Shew_0079 0.75 +0.1 92,960 + Shew_0079 0.76 -0.7 92,968 - Shew_0079 0.76 +1.0 92,968 - Shew_0079 0.76 -1.1 93,149 - Shew_0079 0.89 -0.4 93,373 + +0.0 93,477 + +0.8 93,510 - -0.3 93,537 + -0.4 93,545 - +0.3 93,545 - +0.8 93,555 - -2.9 93,555 - +0.8 93,589 - +0.2 93,589 - -0.9 93,597 + +0.5 93,641 - -1.3 93,681 + +0.5 93,681 + +0.2 93,681 + +0.7 93,681 + +0.3 93,681 + -0.1 93,681 + +1.0 93,689 - +1.3 93,689 - -1.5 93,689 - +0.2 93,825 + Shew_0080 0.19 +1.7 93,955 - Shew_0080 0.29 +0.8 94,003 - Shew_0080 0.33 -0.3 94,014 - Shew_0080 0.34 +0.5 94,054 + Shew_0080 0.37 +0.5 94,145 - Shew_0080 0.44 +2.4 94,160 + Shew_0080 0.45 +1.5 94,168 - Shew_0080 0.46 +0.9 94,283 - Shew_0080 0.55 +0.9
Or see this region's nucleotide sequence