Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0434

Experiment: No antibiotic (cells washed) OG2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0433 and tRNA-Arg are separated by 70 nucleotidestRNA-Arg and Synpcc7942_0434 are separated by 72 nucleotidesSynpcc7942_0434 and Synpcc7942_0435 are separated by 10 nucleotidesSynpcc7942_0435 and Synpcc7942_0436 are separated by 14 nucleotides Synpcc7942_0433: Synpcc7942_0433 - hypothetical protein, at 423,632 to 424,840 _0433 Synpcc7942_R0031: tRNA-Arg - tRNA-Arg, at 424,911 to 424,984 tRNA-Arg Synpcc7942_0434: Synpcc7942_0434 - hypothetical protein, at 425,057 to 426,064 _0434 Synpcc7942_0435: Synpcc7942_0435 - hypothetical protein, at 426,075 to 426,830 _0435 Synpcc7942_0436: Synpcc7942_0436 - hypothetical protein, at 426,845 to 427,150 _0436 Position (kb) 425 426 427Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 424.061 kb on + strand, within Synpcc7942_0433at 424.068 kb on - strand, within Synpcc7942_0433at 424.069 kb on - strand, within Synpcc7942_0433at 424.084 kb on + strand, within Synpcc7942_0433at 424.127 kb on + strand, within Synpcc7942_0433at 424.135 kb on - strand, within Synpcc7942_0433at 424.137 kb on + strand, within Synpcc7942_0433at 424.198 kb on + strand, within Synpcc7942_0433at 424.198 kb on + strand, within Synpcc7942_0433at 424.206 kb on - strand, within Synpcc7942_0433at 424.214 kb on - strand, within Synpcc7942_0433at 424.220 kb on + strand, within Synpcc7942_0433at 424.228 kb on - strand, within Synpcc7942_0433at 424.228 kb on - strand, within Synpcc7942_0433at 424.296 kb on - strand, within Synpcc7942_0433at 424.366 kb on + strand, within Synpcc7942_0433at 424.376 kb on - strand, within Synpcc7942_0433at 424.384 kb on + strand, within Synpcc7942_0433at 424.387 kb on - strand, within Synpcc7942_0433at 424.453 kb on - strand, within Synpcc7942_0433at 424.511 kb on + strand, within Synpcc7942_0433at 424.567 kb on + strand, within Synpcc7942_0433at 424.575 kb on - strand, within Synpcc7942_0433at 424.595 kb on + strand, within Synpcc7942_0433at 424.625 kb on - strand, within Synpcc7942_0433at 424.644 kb on + strand, within Synpcc7942_0433at 424.657 kb on - strand, within Synpcc7942_0433at 424.783 kb on + strandat 424.786 kb on - strandat 424.806 kb on - strandat 424.835 kb on + strandat 424.847 kb on - strandat 424.863 kb on + strandat 424.871 kb on - strandat 424.937 kb on + strand, within tRNA-Argat 424.937 kb on + strand, within tRNA-Argat 424.937 kb on + strand, within tRNA-Argat 424.937 kb on + strand, within tRNA-Argat 424.945 kb on - strand, within tRNA-Argat 424.962 kb on - strand, within tRNA-Argat 425.002 kb on - strandat 425.002 kb on - strandat 425.012 kb on - strandat 425.049 kb on + strandat 425.071 kb on - strandat 425.076 kb on + strandat 425.076 kb on + strandat 425.076 kb on + strandat 425.076 kb on + strandat 425.084 kb on - strandat 425.086 kb on + strandat 425.086 kb on + strandat 425.094 kb on - strandat 425.094 kb on - strandat 425.094 kb on - strandat 425.226 kb on + strand, within Synpcc7942_0434at 425.263 kb on - strand, within Synpcc7942_0434at 425.334 kb on + strand, within Synpcc7942_0434at 425.339 kb on - strand, within Synpcc7942_0434at 425.440 kb on + strand, within Synpcc7942_0434at 425.646 kb on + strand, within Synpcc7942_0434at 425.661 kb on - strand, within Synpcc7942_0434at 425.675 kb on + strand, within Synpcc7942_0434at 425.680 kb on + strand, within Synpcc7942_0434at 425.680 kb on + strand, within Synpcc7942_0434at 425.683 kb on - strand, within Synpcc7942_0434at 425.683 kb on - strand, within Synpcc7942_0434at 425.688 kb on - strand, within Synpcc7942_0434at 425.688 kb on - strand, within Synpcc7942_0434at 425.696 kb on + strand, within Synpcc7942_0434at 425.733 kb on + strand, within Synpcc7942_0434at 425.749 kb on + strand, within Synpcc7942_0434at 425.757 kb on + strand, within Synpcc7942_0434at 425.757 kb on + strand, within Synpcc7942_0434at 425.757 kb on - strand, within Synpcc7942_0434at 425.758 kb on - strand, within Synpcc7942_0434at 425.758 kb on - strand, within Synpcc7942_0434at 425.765 kb on - strand, within Synpcc7942_0434at 425.772 kb on + strand, within Synpcc7942_0434at 425.772 kb on + strand, within Synpcc7942_0434at 425.772 kb on + strand, within Synpcc7942_0434at 425.772 kb on + strand, within Synpcc7942_0434at 425.780 kb on - strand, within Synpcc7942_0434at 425.780 kb on - strand, within Synpcc7942_0434at 425.780 kb on - strand, within Synpcc7942_0434at 425.785 kb on - strand, within Synpcc7942_0434at 425.795 kb on + strand, within Synpcc7942_0434at 425.798 kb on - strand, within Synpcc7942_0434at 425.798 kb on - strand, within Synpcc7942_0434at 425.814 kb on + strand, within Synpcc7942_0434at 425.840 kb on + strand, within Synpcc7942_0434at 425.843 kb on - strand, within Synpcc7942_0434at 425.917 kb on - strand, within Synpcc7942_0434at 425.960 kb on - strand, within Synpcc7942_0434at 425.988 kb on - strandat 426.039 kb on - strandat 426.052 kb on - strandat 426.076 kb on - strandat 426.078 kb on + strandat 426.080 kb on + strandat 426.097 kb on - strandat 426.124 kb on + strandat 426.132 kb on - strandat 426.146 kb on - strandat 426.161 kb on + strand, within Synpcc7942_0435at 426.205 kb on + strand, within Synpcc7942_0435at 426.209 kb on + strand, within Synpcc7942_0435at 426.213 kb on - strand, within Synpcc7942_0435at 426.213 kb on - strand, within Synpcc7942_0435at 426.265 kb on + strand, within Synpcc7942_0435at 426.326 kb on + strand, within Synpcc7942_0435at 426.391 kb on + strand, within Synpcc7942_0435at 426.404 kb on - strand, within Synpcc7942_0435at 426.498 kb on - strand, within Synpcc7942_0435at 426.503 kb on + strand, within Synpcc7942_0435at 426.511 kb on + strand, within Synpcc7942_0435at 426.518 kb on + strand, within Synpcc7942_0435at 426.518 kb on + strand, within Synpcc7942_0435at 426.519 kb on - strand, within Synpcc7942_0435at 426.519 kb on - strand, within Synpcc7942_0435at 426.519 kb on - strand, within Synpcc7942_0435at 426.519 kb on - strand, within Synpcc7942_0435at 426.523 kb on + strand, within Synpcc7942_0435at 426.531 kb on - strand, within Synpcc7942_0435at 426.544 kb on - strand, within Synpcc7942_0435at 426.549 kb on - strand, within Synpcc7942_0435at 426.568 kb on + strand, within Synpcc7942_0435at 426.583 kb on + strand, within Synpcc7942_0435at 426.591 kb on + strand, within Synpcc7942_0435at 426.619 kb on + strand, within Synpcc7942_0435at 426.619 kb on + strand, within Synpcc7942_0435at 426.629 kb on + strand, within Synpcc7942_0435at 426.642 kb on - strand, within Synpcc7942_0435at 426.655 kb on - strand, within Synpcc7942_0435at 426.656 kb on - strand, within Synpcc7942_0435at 426.695 kb on + strand, within Synpcc7942_0435at 426.703 kb on - strand, within Synpcc7942_0435at 426.703 kb on - strand, within Synpcc7942_0435at 426.708 kb on + strand, within Synpcc7942_0435at 426.708 kb on + strand, within Synpcc7942_0435at 426.716 kb on - strand, within Synpcc7942_0435at 426.730 kb on + strand, within Synpcc7942_0435at 426.740 kb on + strand, within Synpcc7942_0435at 426.809 kb on + strandat 426.824 kb on - strandat 426.839 kb on + strandat 426.857 kb on + strandat 426.903 kb on - strand, within Synpcc7942_0436at 427.011 kb on - strand, within Synpcc7942_0436at 427.025 kb on - strand, within Synpcc7942_0436at 427.027 kb on + strand, within Synpcc7942_0436at 427.027 kb on + strand, within Synpcc7942_0436at 427.027 kb on + strand, within Synpcc7942_0436

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Per-strain Table

Position Strand Gene LocusTag Fraction No antibiotic (cells washed) OG2
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424,061 + Synpcc7942_0433 0.35 +0.1
424,068 - Synpcc7942_0433 0.36 +0.1
424,069 - Synpcc7942_0433 0.36 -0.4
424,084 + Synpcc7942_0433 0.37 +0.3
424,127 + Synpcc7942_0433 0.41 +0.3
424,135 - Synpcc7942_0433 0.42 -1.7
424,137 + Synpcc7942_0433 0.42 -0.1
424,198 + Synpcc7942_0433 0.47 +0.4
424,198 + Synpcc7942_0433 0.47 +0.5
424,206 - Synpcc7942_0433 0.47 +0.3
424,214 - Synpcc7942_0433 0.48 +0.2
424,220 + Synpcc7942_0433 0.49 +0.2
424,228 - Synpcc7942_0433 0.49 -0.7
424,228 - Synpcc7942_0433 0.49 +0.9
424,296 - Synpcc7942_0433 0.55 -0.3
424,366 + Synpcc7942_0433 0.61 -0.1
424,376 - Synpcc7942_0433 0.62 +0.0
424,384 + Synpcc7942_0433 0.62 +0.4
424,387 - Synpcc7942_0433 0.62 +0.8
424,453 - Synpcc7942_0433 0.68 -0.5
424,511 + Synpcc7942_0433 0.73 -0.1
424,567 + Synpcc7942_0433 0.77 +0.1
424,575 - Synpcc7942_0433 0.78 +0.6
424,595 + Synpcc7942_0433 0.80 -0.9
424,625 - Synpcc7942_0433 0.82 -0.1
424,644 + Synpcc7942_0433 0.84 +0.7
424,657 - Synpcc7942_0433 0.85 +1.1
424,783 + +0.6
424,786 - -0.3
424,806 - -0.7
424,835 + -0.3
424,847 - -0.7
424,863 + +0.1
424,871 - -0.6
424,937 + tRNA-Arg Synpcc7942_R0031 0.35 +1.1
424,937 + tRNA-Arg Synpcc7942_R0031 0.35 +0.8
424,937 + tRNA-Arg Synpcc7942_R0031 0.35 +0.6
424,937 + tRNA-Arg Synpcc7942_R0031 0.35 +0.5
424,945 - tRNA-Arg Synpcc7942_R0031 0.46 +0.6
424,962 - tRNA-Arg Synpcc7942_R0031 0.69 +0.0
425,002 - +0.8
425,002 - +0.4
425,012 - -0.4
425,049 + +0.3
425,071 - -2.1
425,076 + -2.9
425,076 + -1.7
425,076 + -3.7
425,076 + -2.2
425,084 - -1.4
425,086 + -3.6
425,086 + -1.1
425,094 - -3.0
425,094 - -1.0
425,094 - -2.7
425,226 + Synpcc7942_0434 0.17 +0.9
425,263 - Synpcc7942_0434 0.20 -3.3
425,334 + Synpcc7942_0434 0.27 -2.5
425,339 - Synpcc7942_0434 0.28 -1.7
425,440 + Synpcc7942_0434 0.38 -2.6
425,646 + Synpcc7942_0434 0.58 -2.7
425,661 - Synpcc7942_0434 0.60 -2.2
425,675 + Synpcc7942_0434 0.61 -2.2
425,680 + Synpcc7942_0434 0.62 -1.2
425,680 + Synpcc7942_0434 0.62 -0.4
425,683 - Synpcc7942_0434 0.62 -1.4
425,683 - Synpcc7942_0434 0.62 -2.8
425,688 - Synpcc7942_0434 0.63 -4.1
425,688 - Synpcc7942_0434 0.63 -2.4
425,696 + Synpcc7942_0434 0.63 -2.1
425,733 + Synpcc7942_0434 0.67 -1.1
425,749 + Synpcc7942_0434 0.69 -2.9
425,757 + Synpcc7942_0434 0.69 -1.0
425,757 + Synpcc7942_0434 0.69 -2.2
425,757 - Synpcc7942_0434 0.69 -2.1
425,758 - Synpcc7942_0434 0.70 -2.3
425,758 - Synpcc7942_0434 0.70 -2.5
425,765 - Synpcc7942_0434 0.70 -2.9
425,772 + Synpcc7942_0434 0.71 -3.3
425,772 + Synpcc7942_0434 0.71 -2.3
425,772 + Synpcc7942_0434 0.71 -1.9
425,772 + Synpcc7942_0434 0.71 -2.5
425,780 - Synpcc7942_0434 0.72 -1.8
425,780 - Synpcc7942_0434 0.72 -1.7
425,780 - Synpcc7942_0434 0.72 -2.1
425,785 - Synpcc7942_0434 0.72 -2.6
425,795 + Synpcc7942_0434 0.73 -1.7
425,798 - Synpcc7942_0434 0.74 -2.5
425,798 - Synpcc7942_0434 0.74 -2.1
425,814 + Synpcc7942_0434 0.75 -1.9
425,840 + Synpcc7942_0434 0.78 -3.4
425,843 - Synpcc7942_0434 0.78 -3.5
425,917 - Synpcc7942_0434 0.85 -1.4
425,960 - Synpcc7942_0434 0.90 -3.1
425,988 - -1.3
426,039 - -1.7
426,052 - -2.5
426,076 - +0.8
426,078 + -2.1
426,080 + -0.1
426,097 - -0.2
426,124 + -2.4
426,132 - -3.1
426,146 - -1.6
426,161 + Synpcc7942_0435 0.11 -3.3
426,205 + Synpcc7942_0435 0.17 -1.9
426,209 + Synpcc7942_0435 0.18 -0.6
426,213 - Synpcc7942_0435 0.18 -1.1
426,213 - Synpcc7942_0435 0.18 -2.3
426,265 + Synpcc7942_0435 0.25 -3.1
426,326 + Synpcc7942_0435 0.33 -2.0
426,391 + Synpcc7942_0435 0.42 -1.6
426,404 - Synpcc7942_0435 0.44 -1.7
426,498 - Synpcc7942_0435 0.56 -2.2
426,503 + Synpcc7942_0435 0.57 -0.9
426,511 + Synpcc7942_0435 0.58 -0.6
426,518 + Synpcc7942_0435 0.59 -0.7
426,518 + Synpcc7942_0435 0.59 -2.0
426,519 - Synpcc7942_0435 0.59 -3.2
426,519 - Synpcc7942_0435 0.59 -2.2
426,519 - Synpcc7942_0435 0.59 -1.1
426,519 - Synpcc7942_0435 0.59 -0.4
426,523 + Synpcc7942_0435 0.59 -0.4
426,531 - Synpcc7942_0435 0.60 -3.7
426,544 - Synpcc7942_0435 0.62 -3.1
426,549 - Synpcc7942_0435 0.63 -1.3
426,568 + Synpcc7942_0435 0.65 -1.4
426,583 + Synpcc7942_0435 0.67 -2.2
426,591 + Synpcc7942_0435 0.68 -1.1
426,619 + Synpcc7942_0435 0.72 -2.3
426,619 + Synpcc7942_0435 0.72 -1.4
426,629 + Synpcc7942_0435 0.73 -2.9
426,642 - Synpcc7942_0435 0.75 -1.7
426,655 - Synpcc7942_0435 0.77 -2.0
426,656 - Synpcc7942_0435 0.77 -2.2
426,695 + Synpcc7942_0435 0.82 -0.8
426,703 - Synpcc7942_0435 0.83 -1.7
426,703 - Synpcc7942_0435 0.83 -3.1
426,708 + Synpcc7942_0435 0.84 -2.5
426,708 + Synpcc7942_0435 0.84 -0.9
426,716 - Synpcc7942_0435 0.85 -1.4
426,730 + Synpcc7942_0435 0.87 -3.7
426,740 + Synpcc7942_0435 0.88 -1.7
426,809 + -0.4
426,824 - +0.1
426,839 + +0.6
426,857 + +0.9
426,903 - Synpcc7942_0436 0.19 +0.5
427,011 - Synpcc7942_0436 0.54 -0.3
427,025 - Synpcc7942_0436 0.59 +1.2
427,027 + Synpcc7942_0436 0.59 -0.7
427,027 + Synpcc7942_0436 0.59 +0.8
427,027 + Synpcc7942_0436 0.59 -0.6

Or see this region's nucleotide sequence