Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19320

Experiment: CDM1 without Valine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Valine
2,112,410	-		BBR_RS19310	0.87	-0.2
2,112,418	-		BBR_RS19310	0.88	-0.4
2,112,422	-		BBR_RS19310	0.88	+0.0
2,112,457	-				+1.1
2,112,473	+				-1.3
2,112,475	-				-1.1
2,112,502	-				-0.2
2,112,510	-				-0.7
2,112,520	+				+0.1
2,112,526	+				+0.6
2,112,534	-				-0.5
2,112,534	-				+0.3
2,112,542	+				+0.2
2,112,563	-				-0.4
2,112,578	-				-0.9
2,112,578	-				-0.0
2,112,578	-				+0.7
2,112,578	-				+0.5
2,112,579	-				+0.3
2,112,605	-				+1.2
2,112,611	-				+0.3
2,112,614	+				+1.0
2,112,635	-				-0.4
2,112,635	-				-0.9
2,112,639	-				-0.3
2,112,658	+				+0.3
2,112,663	+				-1.1
2,112,666	-				-1.0
2,112,671	-				+0.3
2,112,674	-				-0.3
2,112,676	-				+0.9
2,112,676	-				-0.4
2,112,680	+				-0.6
2,112,688	-				-1.0
2,112,688	-				-0.0
2,112,768	+				-0.8
2,112,768	+				+0.9
2,112,768	+				-0.3
2,112,775	+				-0.9
2,112,776	-				-0.1
2,112,776	-				+0.5
2,112,776	-				+0.4
2,112,776	-				-2.0
2,112,783	+				+0.0
2,112,791	+				+0.6
2,112,792	-				+0.1
2,112,803	+				-0.4
2,112,805	+				+0.2
2,112,819	+		BBR_RS19315	0.11	-2.0
2,112,827	-		BBR_RS19315	0.12	-0.2
2,112,847	+		BBR_RS19315	0.16	-1.3
2,112,877	-		BBR_RS19315	0.21	+0.6
2,112,887	+		BBR_RS19315	0.23	-2.4
2,112,887	+		BBR_RS19315	0.23	-1.9
2,112,895	-		BBR_RS19315	0.24	+0.4
2,112,895	-		BBR_RS19315	0.24	-0.1
2,112,908	+		BBR_RS19315	0.26	+0.3
2,112,948	+		BBR_RS19315	0.33	-1.2
2,112,973	+		BBR_RS19315	0.38	-0.2
2,112,981	-		BBR_RS19315	0.39	-0.4
2,113,079	+		BBR_RS19315	0.56	-0.1
2,113,087	+		BBR_RS19315	0.58	-1.6
2,113,087	-		BBR_RS19315	0.58	-0.1
2,113,095	-		BBR_RS19315	0.59	-0.3
2,113,116	-		BBR_RS19315	0.63	+0.7
2,113,143	-		BBR_RS19315	0.67	+0.3
2,113,151	+		BBR_RS19315	0.69	-2.2
2,113,171	+		BBR_RS19315	0.72	-1.8
2,113,181	-		BBR_RS19315	0.74	-2.8
2,113,196	+		BBR_RS19315	0.77	-2.6
2,113,207	-		BBR_RS19315	0.79	+0.7
2,113,220	+		BBR_RS19315	0.81	-0.3
2,113,232	+		BBR_RS19315	0.83	-0.9
2,113,289	+				-1.8
2,113,289	+				-0.5
2,113,298	+				-2.5
2,113,301	-				+0.5
2,113,316	+				-0.8
2,113,323	+				-0.9
2,113,331	-				+0.0
2,113,338	+				-1.6
2,113,338	+				+0.2
2,113,338	-				+0.8
2,113,346	+				-0.9
2,113,359	+				+0.4
2,113,359	+				-0.0
2,113,389	+				+1.3
2,113,389	+				-0.4
2,113,397	-				+0.1
2,113,412	+		BBR_RS19320	0.12	-1.2
2,113,419	+		BBR_RS19320	0.13	-0.5
2,113,420	-		BBR_RS19320	0.14	-0.5
2,113,420	-		BBR_RS19320	0.14	+0.7
2,113,420	-		BBR_RS19320	0.14	+0.2
2,113,433	-		BBR_RS19320	0.17	+0.4
2,113,465	-		BBR_RS19320	0.25	+0.0
2,113,465	-		BBR_RS19320	0.25	-1.1
2,113,465	-		BBR_RS19320	0.25	+1.0
2,113,505	+		BBR_RS19320	0.35	-0.2
2,113,528	+		BBR_RS19320	0.41	-1.4
2,113,528	+		BBR_RS19320	0.41	-2.5
2,113,528	+		BBR_RS19320	0.41	-0.0
2,113,536	-		BBR_RS19320	0.43	+0.5
2,113,536	-		BBR_RS19320	0.43	+0.8
2,113,536	-		BBR_RS19320	0.43	-0.5
2,113,541	-		BBR_RS19320	0.45	-0.5
2,113,549	-		BBR_RS19320	0.47	+0.2
2,113,558	+		BBR_RS19320	0.49	-2.4
2,113,558	+		BBR_RS19320	0.49	-0.7
2,113,559	-		BBR_RS19320	0.49	+1.7
2,113,566	-		BBR_RS19320	0.51	+0.6
2,113,566	-		BBR_RS19320	0.51	+0.9
2,113,566	-		BBR_RS19320	0.51	-0.8
2,113,566	-		BBR_RS19320	0.51	+0.5
2,113,570	-		BBR_RS19320	0.52	-1.1
2,113,593	-		BBR_RS19320	0.58	-0.4
2,113,603	-		BBR_RS19320	0.61	-0.4
2,113,626	-		BBR_RS19320	0.66	+0.8
2,113,642	-		BBR_RS19320	0.71	+1.2
2,113,642	-		BBR_RS19320	0.71	-0.9
2,113,644	-		BBR_RS19320	0.71	+1.5
2,113,644	-		BBR_RS19320	0.71	+0.1
2,113,644	-		BBR_RS19320	0.71	-0.1
2,113,644	-		BBR_RS19320	0.71	-0.0
2,113,644	-		BBR_RS19320	0.71	+0.6
2,113,644	-		BBR_RS19320	0.71	+0.2
2,113,673	-		BBR_RS19320	0.78	-1.5
2,113,686	-		BBR_RS19320	0.82	+1.2
2,113,747	-				-1.1
2,113,759	+				-2.1
2,113,765	+				-1.4
2,113,765	+				-1.1
2,113,765	+				-2.0
2,113,773	-				-0.9
2,113,773	-				-2.1
2,113,773	-				-1.7
2,113,778	-				-1.8
2,113,807	-		BBR_RS19325	0.19	-2.4
2,113,945	-		BBR_RS19325	0.61	-3.1
2,113,947	-		BBR_RS19325	0.62	-1.4
2,113,951	+		BBR_RS19325	0.63	-4.5
2,113,958	+		BBR_RS19325	0.65	-1.7
2,114,015	-		BBR_RS19325	0.83	+0.4
2,114,062	-				+0.2
2,114,168	+		BBR_RS21085	0.48	-0.6
2,114,168	+		BBR_RS21085	0.48	-0.3
2,114,189	+		BBR_RS21085	0.58	-0.5
2,114,209	-		BBR_RS21085	0.67	-0.0
2,114,225	+		BBR_RS21085	0.75	-1.1
2,114,230	+		BBR_RS21085	0.77	-1.1
2,114,230	+		BBR_RS21085	0.77	-0.0
2,114,247	+		BBR_RS21085	0.85	-1.3
2,114,247	+		BBR_RS21085	0.85	-0.6
2,114,261	+				+0.1
2,114,271	+				-0.6
2,114,271	+				-0.1
2,114,271	+				-0.5
2,114,279	-				+0.2
2,114,279	-				+0.8
2,114,279	-				+0.3
2,114,279	-				-3.0
2,114,279	-				-0.2
2,114,279	-				-0.4
2,114,281	-				+0.0
2,114,289	-				+0.5
2,114,333	+				+0.7
2,114,349	-		BBR_RS19330	0.11	-1.3
2,114,385	+		BBR_RS19330	0.30	-0.1
2,114,408	+		BBR_RS19330	0.42	-0.4
2,114,408	-		BBR_RS19330	0.42	-0.3
2,114,416	-		BBR_RS19330	0.47	-1.3
2,114,416	-		BBR_RS19330	0.47	-1.3
2,114,455	+		BBR_RS19330	0.68	+1.2
2,114,470	+		BBR_RS19330	0.76	-1.1
2,114,473	-		BBR_RS19330	0.77	+0.0
2,114,478	-		BBR_RS19330	0.80	-0.9
2,114,478	-		BBR_RS19330	0.80	-0.1
2,114,488	-		BBR_RS19330	0.85	+0.5
2,114,508	+				-1.1
2,114,584	+				+0.0
2,114,597	-				+0.8
2,114,612	+				-0.3
2,114,612	+				+0.0
2,114,617	+				-1.1
2,114,617	+				-2.2
2,114,620	-				-0.6
2,114,620	-				-0.5
2,114,620	-				+0.3
2,114,620	-				+0.9
2,114,622	+				-0.6
2,114,630	-				+0.8
2,114,630	-				+0.0
2,114,653	-		BBR_RS19335	0.11	+0.2
2,114,655	+		BBR_RS19335	0.11	-0.4
2,114,658	-		BBR_RS19335	0.12	+1.2
2,114,658	-		BBR_RS19335	0.12	+1.1
2,114,663	+		BBR_RS19335	0.12	-0.0
2,114,683	-		BBR_RS19335	0.14	+0.2
2,114,688	-		BBR_RS19335	0.14	+0.5
2,114,692	-		BBR_RS19335	0.15	-0.2
2,114,752	+		BBR_RS19335	0.20	-1.7