Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15405

Experiment: CDM1 without Valine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Valine
1,223,874	-				+1.7
1,223,941	+				+0.4
1,223,977	+				-0.2
1,223,982	+				-1.2
1,224,086	+		BBR_RS15400	0.13	+0.5
1,224,094	-		BBR_RS15400	0.14	-0.3
1,224,121	-		BBR_RS15400	0.19	+1.7
1,224,145	+		BBR_RS15400	0.23	+0.3
1,224,155	+		BBR_RS15400	0.25	-2.7
1,224,155	+		BBR_RS15400	0.25	-0.6
1,224,155	+		BBR_RS15400	0.25	+0.2
1,224,163	-		BBR_RS15400	0.27	+0.0
1,224,163	-		BBR_RS15400	0.27	+1.0
1,224,181	-		BBR_RS15400	0.30	+1.7
1,224,192	-		BBR_RS15400	0.32	+0.3
1,224,342	-		BBR_RS15400	0.59	+0.7
1,224,355	+		BBR_RS15400	0.61	-0.3
1,224,355	+		BBR_RS15400	0.61	+0.1
1,224,358	-		BBR_RS15400	0.61	+1.8
1,224,358	-		BBR_RS15400	0.61	+0.5
1,224,365	+		BBR_RS15400	0.63	-0.2
1,224,365	+		BBR_RS15400	0.63	-1.9
1,224,379	+		BBR_RS15400	0.65	-0.1
1,224,398	+		BBR_RS15400	0.69	+0.9
1,224,401	-		BBR_RS15400	0.69	+0.0
1,224,426	-		BBR_RS15400	0.74	+1.2
1,224,441	-		BBR_RS15400	0.76	+1.0
1,224,442	+		BBR_RS15400	0.77	+0.2
1,224,442	+		BBR_RS15400	0.77	+0.0
1,224,442	+		BBR_RS15400	0.77	-0.3
1,224,450	-		BBR_RS15400	0.78	+1.5
1,224,450	-		BBR_RS15400	0.78	-0.4
1,224,450	-		BBR_RS15400	0.78	+0.6
1,224,450	-		BBR_RS15400	0.78	-0.6
1,224,496	+		BBR_RS15400	0.86	-0.4
1,224,571	-				+0.0
1,224,579	-				+1.3
1,224,597	-				+0.7
1,224,597	-				+1.2
1,224,621	-				-0.5
1,224,705	-				+0.3
1,224,705	-				-1.2
1,224,737	-				+1.6
1,224,847	-				-1.2
1,224,868	-				-1.9
1,224,872	+				-2.0
1,224,917	-				-2.6
1,224,917	-				-1.1
1,224,933	-				+0.5
1,225,025	-				-2.0
1,225,038	+				+0.7
1,225,038	+				+1.1
1,225,083	+		BBR_RS15405	0.11	+1.3
1,225,140	+		BBR_RS15405	0.14	-2.0
1,225,182	+		BBR_RS15405	0.16	-0.4
1,225,197	-		BBR_RS15405	0.16	-0.7
1,225,225	+		BBR_RS15405	0.18	-2.8
1,225,247	-		BBR_RS15405	0.18	+0.6
1,225,267	+		BBR_RS15405	0.19	-0.5
1,225,274	-		BBR_RS15405	0.20	+0.3
1,225,307	+		BBR_RS15405	0.21	-3.9
1,225,307	+		BBR_RS15405	0.21	-1.2
1,225,330	+		BBR_RS15405	0.22	-0.4
1,225,338	+		BBR_RS15405	0.22	-1.5
1,225,346	-		BBR_RS15405	0.23	-0.4
1,225,370	+		BBR_RS15405	0.24	-2.0
1,225,375	+		BBR_RS15405	0.24	-2.7
1,225,375	+		BBR_RS15405	0.24	-1.1
1,225,375	+		BBR_RS15405	0.24	-2.3
1,225,383	-		BBR_RS15405	0.24	+0.3
1,225,446	+		BBR_RS15405	0.27	-1.5
1,225,454	+		BBR_RS15405	0.27	-1.1
1,225,506	-		BBR_RS15405	0.30	-1.4
1,225,506	-		BBR_RS15405	0.30	+1.7
1,225,539	+		BBR_RS15405	0.31	-1.0
1,225,540	+		BBR_RS15405	0.31	-1.9
1,225,543	-		BBR_RS15405	0.31	-1.6
1,225,547	-		BBR_RS15405	0.32	-0.2
1,225,560	-		BBR_RS15405	0.32	-0.8
1,225,560	-		BBR_RS15405	0.32	-0.8
1,225,585	+		BBR_RS15405	0.33	-2.3
1,225,622	+		BBR_RS15405	0.35	-2.3
1,225,622	+		BBR_RS15405	0.35	-3.0
1,225,623	+		BBR_RS15405	0.35	-2.4
1,225,623	+		BBR_RS15405	0.35	-1.4
1,225,631	-		BBR_RS15405	0.35	-2.0
1,225,654	+		BBR_RS15405	0.36	-1.2
1,225,655	+		BBR_RS15405	0.36	-0.4
1,225,752	+		BBR_RS15405	0.40	-3.5
1,225,760	-		BBR_RS15405	0.41	+0.3
1,225,770	+		BBR_RS15405	0.41	-2.5
1,225,789	-		BBR_RS15405	0.42	-1.6
1,225,812	+		BBR_RS15405	0.43	-1.4
1,225,877	-		BBR_RS15405	0.46	-1.6
1,225,892	+		BBR_RS15405	0.46	-1.6
1,225,917	-		BBR_RS15405	0.48	+0.5
1,225,951	+		BBR_RS15405	0.49	-0.9
1,225,980	+		BBR_RS15405	0.50	-3.6
1,225,980	+		BBR_RS15405	0.50	-3.6
1,225,986	-		BBR_RS15405	0.51	-0.0
1,225,998	+		BBR_RS15405	0.51	-2.8
1,226,055	-		BBR_RS15405	0.54	-1.2
1,226,093	+		BBR_RS15405	0.55	-1.5
1,226,153	+		BBR_RS15405	0.58	-1.1
1,226,191	+		BBR_RS15405	0.59	-0.8
1,226,199	-		BBR_RS15405	0.60	-0.3
1,226,210	+		BBR_RS15405	0.60	-1.1
1,226,225	-		BBR_RS15405	0.61	-0.4
1,226,244	-		BBR_RS15405	0.62	-0.6
1,226,285	-		BBR_RS15405	0.64	+1.3
1,226,373	+		BBR_RS15405	0.67	-2.9
1,226,382	-		BBR_RS15405	0.68	-2.1
1,226,393	-		BBR_RS15405	0.68	-0.9
1,226,418	+		BBR_RS15405	0.69	-2.9
1,226,473	+		BBR_RS15405	0.72	-1.3
1,226,473	+		BBR_RS15405	0.72	-3.5
1,226,473	+		BBR_RS15405	0.72	-1.5
1,226,473	+		BBR_RS15405	0.72	-1.8
1,226,473	+		BBR_RS15405	0.72	-3.4
1,226,473	+		BBR_RS15405	0.72	-1.4
1,226,473	+		BBR_RS15405	0.72	-1.9
1,226,473	+		BBR_RS15405	0.72	-2.7
1,226,473	+		BBR_RS15405	0.72	-3.7
1,226,481	-		BBR_RS15405	0.72	+0.4
1,226,481	-		BBR_RS15405	0.72	-0.0
1,226,481	-		BBR_RS15405	0.72	-1.5
1,226,481	-		BBR_RS15405	0.72	-1.8
1,226,481	-		BBR_RS15405	0.72	-1.5
1,226,481	-		BBR_RS15405	0.72	-2.1
1,226,481	-		BBR_RS15405	0.72	-1.4
1,226,528	+		BBR_RS15405	0.74	-1.7
1,226,532	+		BBR_RS15405	0.74	-3.7
1,226,540	-		BBR_RS15405	0.75	-0.0
1,226,561	-		BBR_RS15405	0.76	-0.4
1,226,635	+		BBR_RS15405	0.79	-1.0
1,226,745	+		BBR_RS15405	0.84	-0.9
1,226,764	+		BBR_RS15405	0.84	-1.6
1,226,764	+		BBR_RS15405	0.84	-1.5
1,226,767	-		BBR_RS15405	0.84	+0.1
1,226,768	-		BBR_RS15405	0.85	-1.0
1,226,774	+		BBR_RS15405	0.85	-3.3
1,227,019	-				-2.2
1,227,019	-				-1.5
1,227,019	-				-2.0
1,227,032	+				-0.4
1,227,035	+				-2.1
1,227,071	-				-1.4
1,227,077	-				-0.3
1,227,077	-				-1.3
1,227,099	-				+0.1
1,227,184	+				-1.3
1,227,189	+				-1.6
1,227,189	+				-2.4
1,227,331	-				+0.3
1,227,341	-				+1.1
1,227,355	-				+0.1
1,227,368	-		BBR_RS15410	0.11	+0.4
1,227,409	-		BBR_RS15410	0.16	+0.9
1,227,418	+		BBR_RS15410	0.17	+0.9
1,227,492	-		BBR_RS15410	0.26	-1.4
1,227,527	-		BBR_RS15410	0.30	-0.0
1,227,591	-		BBR_RS15410	0.38	+0.9
1,227,621	+		BBR_RS15410	0.41	+1.3
1,227,682	-		BBR_RS15410	0.48	-1.7
1,227,698	+		BBR_RS15410	0.50	+0.7
1,227,759	+		BBR_RS15410	0.57	+1.2
1,227,902	-		BBR_RS15410	0.74	-1.1
1,227,905	+		BBR_RS15410	0.74	-0.3
1,227,934	-		BBR_RS15410	0.78	+1.7
1,227,934	-		BBR_RS15410	0.78	+0.9
1,227,986	+		BBR_RS15410	0.84	-0.7
1,228,002	-		BBR_RS15410	0.86	+0.3
1,228,027	+		BBR_RS15410	0.89	+1.5
1,228,044	-				-0.6
1,228,061	+				+0.9