Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_699

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_698 and Ac3H11_699 are separated by 141 nucleotidesAc3H11_699 and Ac3H11_700 are separated by 3 nucleotides Ac3H11_698 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein, at 54,990 to 56,576 _698 Ac3H11_699 - RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein, at 56,718 to 57,107 _699 Ac3H11_700 - 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45), at 57,111 to 58,070 _700 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1at 55.770 kb on + strand, within Ac3H11_698at 55.783 kb on + strand, within Ac3H11_698at 55.784 kb on - strand, within Ac3H11_698at 55.969 kb on + strand, within Ac3H11_698at 55.969 kb on + strand, within Ac3H11_698at 56.075 kb on - strand, within Ac3H11_698at 56.257 kb on + strand, within Ac3H11_698at 56.257 kb on + strand, within Ac3H11_698at 56.257 kb on + strand, within Ac3H11_698at 56.258 kb on - strand, within Ac3H11_698at 56.335 kb on + strand, within Ac3H11_698at 56.335 kb on + strand, within Ac3H11_698at 56.335 kb on + strand, within Ac3H11_698at 56.336 kb on - strand, within Ac3H11_698at 56.336 kb on - strand, within Ac3H11_698at 56.347 kb on + strand, within Ac3H11_698at 56.347 kb on + strand, within Ac3H11_698at 56.348 kb on - strand, within Ac3H11_698at 56.348 kb on - strand, within Ac3H11_698at 56.348 kb on - strand, within Ac3H11_698at 56.348 kb on - strand, within Ac3H11_698at 56.348 kb on - strand, within Ac3H11_698at 56.725 kb on + strandat 56.726 kb on - strandat 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.998 kb on - strand, within Ac3H11_699at 56.998 kb on - strand, within Ac3H11_699at 57.091 kb on - strandat 57.202 kb on - strandat 57.202 kb on - strandat 57.202 kb on - strandat 57.273 kb on + strand, within Ac3H11_700at 57.273 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.388 kb on - strand, within Ac3H11_700at 57.388 kb on - strand, within Ac3H11_700at 57.388 kb on - strand, within Ac3H11_700at 57.388 kb on - strand, within Ac3H11_700at 57.388 kb on - strand, within Ac3H11_700at 57.388 kb on - strand, within Ac3H11_700at 57.427 kb on - strand, within Ac3H11_700at 57.579 kb on + strand, within Ac3H11_700at 57.579 kb on + strand, within Ac3H11_700at 57.580 kb on - strand, within Ac3H11_700at 57.580 kb on - strand, within Ac3H11_700at 57.708 kb on + strand, within Ac3H11_700at 57.982 kb on - strandat 58.068 kb on + strandat 58.068 kb on + strandat 58.068 kb on + strandat 58.069 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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55,770 + Ac3H11_698 0.49 +0.4
55,783 + Ac3H11_698 0.50 -0.6
55,784 - Ac3H11_698 0.50 +0.8
55,969 + Ac3H11_698 0.62 -0.4
55,969 + Ac3H11_698 0.62 +0.8
56,075 - Ac3H11_698 0.68 -0.1
56,257 + Ac3H11_698 0.80 +0.1
56,257 + Ac3H11_698 0.80 -0.5
56,257 + Ac3H11_698 0.80 -0.6
56,258 - Ac3H11_698 0.80 -0.3
56,335 + Ac3H11_698 0.85 -0.4
56,335 + Ac3H11_698 0.85 +0.8
56,335 + Ac3H11_698 0.85 -2.2
56,336 - Ac3H11_698 0.85 -1.0
56,336 - Ac3H11_698 0.85 -0.8
56,347 + Ac3H11_698 0.86 -0.8
56,347 + Ac3H11_698 0.86 +0.6
56,348 - Ac3H11_698 0.86 -0.4
56,348 - Ac3H11_698 0.86 -0.3
56,348 - Ac3H11_698 0.86 +0.8
56,348 - Ac3H11_698 0.86 -0.0
56,348 - Ac3H11_698 0.86 +0.5
56,725 + -0.2
56,726 - -0.7
56,997 + Ac3H11_699 0.72 +0.5
56,997 + Ac3H11_699 0.72 -1.2
56,997 + Ac3H11_699 0.72 +0.2
56,997 + Ac3H11_699 0.72 -0.1
56,997 + Ac3H11_699 0.72 -1.8
56,997 + Ac3H11_699 0.72 -1.4
56,997 + Ac3H11_699 0.72 -0.2
56,997 + Ac3H11_699 0.72 -0.9
56,997 + Ac3H11_699 0.72 -0.5
56,997 + Ac3H11_699 0.72 -0.1
56,997 + Ac3H11_699 0.72 +0.3
56,998 - Ac3H11_699 0.72 -0.1
56,998 - Ac3H11_699 0.72 +0.4
57,091 - -0.4
57,202 - -1.2
57,202 - +0.8
57,202 - -0.2
57,273 + Ac3H11_700 0.17 +0.2
57,273 + Ac3H11_700 0.17 +0.4
57,387 + Ac3H11_700 0.29 -1.1
57,387 + Ac3H11_700 0.29 +0.3
57,387 + Ac3H11_700 0.29 +1.1
57,387 + Ac3H11_700 0.29 -0.4
57,387 + Ac3H11_700 0.29 -0.6
57,387 + Ac3H11_700 0.29 +0.4
57,387 + Ac3H11_700 0.29 -0.1
57,387 + Ac3H11_700 0.29 +0.4
57,387 + Ac3H11_700 0.29 -0.4
57,387 + Ac3H11_700 0.29 -0.5
57,388 - Ac3H11_700 0.29 -0.3
57,388 - Ac3H11_700 0.29 +0.6
57,388 - Ac3H11_700 0.29 -0.2
57,388 - Ac3H11_700 0.29 -0.6
57,388 - Ac3H11_700 0.29 -0.1
57,388 - Ac3H11_700 0.29 +0.6
57,427 - Ac3H11_700 0.33 -0.4
57,579 + Ac3H11_700 0.49 -0.3
57,579 + Ac3H11_700 0.49 -0.1
57,580 - Ac3H11_700 0.49 +1.0
57,580 - Ac3H11_700 0.49 +0.6
57,708 + Ac3H11_700 0.62 +1.5
57,982 - +0.5
58,068 + +0.3
58,068 + -0.6
58,068 + +0.3
58,069 - +1.2

Or see this region's nucleotide sequence