Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3667

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3664 and Ac3H11_3665 are separated by 97 nucleotidesAc3H11_3665 and Ac3H11_3666 are separated by 16 nucleotidesAc3H11_3666 and Ac3H11_3667 are separated by 63 nucleotidesAc3H11_3667 and Ac3H11_3668 are separated by 132 nucleotides Ac3H11_3664 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2), at 12,791 to 15,070 _3664 Ac3H11_3665 - DNA-directed RNA polymerase omega subunit (EC 2.7.7.6), at 15,168 to 15,371 _3665 Ac3H11_3666 - Guanylate kinase (EC 2.7.4.8), at 15,388 to 15,981 _3666 Ac3H11_3667 - Protein YicC, at 16,045 to 16,962 _3667 Ac3H11_3668 - Serine/threonine protein kinase, at 17,095 to 18,054 _3668 Position (kb) 16 17Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 15.056 kb on - strandat 15.075 kb on + strandat 15.076 kb on - strandat 15.076 kb on - strandat 15.076 kb on - strandat 15.076 kb on - strandat 15.076 kb on - strandat 15.076 kb on - strandat 15.076 kb on - strandat 15.076 kb on - strandat 15.076 kb on - strandat 15.076 kb on - strandat 15.076 kb on - strandat 15.081 kb on + strandat 15.082 kb on - strandat 15.397 kb on - strandat 16.953 kb on - strandat 16.953 kb on - strandat 17.037 kb on + strandat 17.037 kb on + strandat 17.037 kb on + strandat 17.037 kb on + strandat 17.037 kb on + strandat 17.038 kb on - strandat 17.038 kb on - strandat 17.089 kb on + strandat 17.134 kb on + strandat 17.134 kb on + strandat 17.134 kb on + strandat 17.134 kb on + strandat 17.135 kb on - strandat 17.135 kb on - strandat 17.135 kb on - strandat 17.135 kb on - strandat 17.135 kb on - strandat 17.135 kb on - strandat 17.135 kb on - strandat 17.135 kb on - strandat 17.135 kb on - strandat 17.179 kb on + strandat 17.179 kb on + strandat 17.179 kb on + strandat 17.179 kb on + strandat 17.179 kb on + strandat 17.179 kb on + strandat 17.179 kb on + strandat 17.179 kb on + strandat 17.179 kb on + strandat 17.180 kb on - strandat 17.180 kb on - strandat 17.180 kb on - strandat 17.180 kb on - strandat 17.180 kb on - strandat 17.180 kb on - strandat 17.180 kb on - strandat 17.180 kb on - strandat 17.180 kb on - strandat 17.254 kb on + strand, within Ac3H11_3668at 17.255 kb on - strand, within Ac3H11_3668at 17.362 kb on + strand, within Ac3H11_3668at 17.362 kb on + strand, within Ac3H11_3668at 17.362 kb on + strand, within Ac3H11_3668at 17.362 kb on + strand, within Ac3H11_3668at 17.362 kb on + strand, within Ac3H11_3668at 17.362 kb on + strand, within Ac3H11_3668at 17.362 kb on + strand, within Ac3H11_3668at 17.362 kb on + strand, within Ac3H11_3668at 17.362 kb on + strand, within Ac3H11_3668at 17.362 kb on + strand, within Ac3H11_3668at 17.362 kb on + strand, within Ac3H11_3668at 17.362 kb on + strand, within Ac3H11_3668at 17.362 kb on + strand, within Ac3H11_3668at 17.363 kb on - strand, within Ac3H11_3668at 17.363 kb on - strand, within Ac3H11_3668at 17.363 kb on - strand, within Ac3H11_3668at 17.363 kb on - strand, within Ac3H11_3668at 17.363 kb on - strand, within Ac3H11_3668at 17.363 kb on - strand, within Ac3H11_3668at 17.363 kb on - strand, within Ac3H11_3668at 17.377 kb on + strand, within Ac3H11_3668at 17.377 kb on + strand, within Ac3H11_3668at 17.377 kb on + strand, within Ac3H11_3668at 17.378 kb on - strand, within Ac3H11_3668at 17.378 kb on - strand, within Ac3H11_3668at 17.378 kb on - strand, within Ac3H11_3668at 17.378 kb on - strand, within Ac3H11_3668at 17.378 kb on - strand, within Ac3H11_3668at 17.378 kb on - strand, within Ac3H11_3668at 17.378 kb on - strand, within Ac3H11_3668at 17.378 kb on - strand, within Ac3H11_3668at 17.529 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.638 kb on + strand, within Ac3H11_3668at 17.639 kb on - strand, within Ac3H11_3668at 17.639 kb on - strand, within Ac3H11_3668at 17.639 kb on - strand, within Ac3H11_3668at 17.639 kb on - strand, within Ac3H11_3668at 17.639 kb on - strand, within Ac3H11_3668at 17.639 kb on - strand, within Ac3H11_3668at 17.639 kb on - strand, within Ac3H11_3668at 17.639 kb on - strand, within Ac3H11_3668at 17.639 kb on - strand, within Ac3H11_3668at 17.639 kb on - strand, within Ac3H11_3668at 17.639 kb on - strand, within Ac3H11_3668at 17.668 kb on + strand, within Ac3H11_3668at 17.668 kb on + strand, within Ac3H11_3668at 17.668 kb on + strand, within Ac3H11_3668at 17.668 kb on + strand, within Ac3H11_3668at 17.669 kb on - strand, within Ac3H11_3668at 17.669 kb on - strand, within Ac3H11_3668at 17.669 kb on - strand, within Ac3H11_3668at 17.707 kb on + strand, within Ac3H11_3668at 17.707 kb on + strand, within Ac3H11_3668at 17.707 kb on + strand, within Ac3H11_3668at 17.707 kb on + strand, within Ac3H11_3668at 17.707 kb on + strand, within Ac3H11_3668at 17.707 kb on + strand, within Ac3H11_3668at 17.707 kb on + strand, within Ac3H11_3668at 17.707 kb on + strand, within Ac3H11_3668at 17.707 kb on + strand, within Ac3H11_3668at 17.707 kb on + strand, within Ac3H11_3668at 17.707 kb on + strand, within Ac3H11_3668at 17.708 kb on - strand, within Ac3H11_3668at 17.708 kb on - strand, within Ac3H11_3668at 17.708 kb on - strand, within Ac3H11_3668at 17.708 kb on - strand, within Ac3H11_3668at 17.708 kb on - strand, within Ac3H11_3668at 17.708 kb on - strand, within Ac3H11_3668at 17.708 kb on - strand, within Ac3H11_3668at 17.708 kb on - strand, within Ac3H11_3668at 17.708 kb on - strand, within Ac3H11_3668at 17.728 kb on + strand, within Ac3H11_3668at 17.728 kb on + strand, within Ac3H11_3668at 17.728 kb on + strand, within Ac3H11_3668at 17.728 kb on + strand, within Ac3H11_3668at 17.728 kb on + strand, within Ac3H11_3668at 17.728 kb on + strand, within Ac3H11_3668at 17.728 kb on + strand, within Ac3H11_3668at 17.729 kb on - strand, within Ac3H11_3668at 17.729 kb on - strand, within Ac3H11_3668at 17.729 kb on - strand, within Ac3H11_3668at 17.821 kb on + strand, within Ac3H11_3668at 17.822 kb on - strand, within Ac3H11_3668at 17.935 kb on + strand, within Ac3H11_3668at 17.936 kb on - strand, within Ac3H11_3668

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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15,056 - +0.6
15,075 + +1.1
15,076 - -0.2
15,076 - +0.0
15,076 - +1.5
15,076 - +0.1
15,076 - +0.5
15,076 - -0.4
15,076 - -0.4
15,076 - +0.8
15,076 - -0.8
15,076 - +0.5
15,076 - +0.8
15,081 + +0.1
15,082 - -0.2
15,397 - +0.1
16,953 - +0.6
16,953 - +0.2
17,037 + +1.1
17,037 + -1.0
17,037 + -2.1
17,037 + +0.1
17,037 + -1.8
17,038 - +0.4
17,038 - -0.4
17,089 + -0.3
17,134 + -0.4
17,134 + +1.1
17,134 + +1.0
17,134 + +0.3
17,135 - -0.7
17,135 - -0.8
17,135 - -0.2
17,135 - +0.6
17,135 - +0.0
17,135 - -0.3
17,135 - -1.3
17,135 - +0.1
17,135 - +0.2
17,179 + +0.5
17,179 + -0.3
17,179 + -0.5
17,179 + -0.3
17,179 + +0.1
17,179 + +0.2
17,179 + -0.1
17,179 + -2.6
17,179 + -0.1
17,180 - -0.8
17,180 - -0.3
17,180 - +0.8
17,180 - +0.1
17,180 - -0.7
17,180 - -0.7
17,180 - +0.4
17,180 - -0.3
17,180 - -0.8
17,254 + Ac3H11_3668 0.17 -0.5
17,255 - Ac3H11_3668 0.17 +0.4
17,362 + Ac3H11_3668 0.28 +0.3
17,362 + Ac3H11_3668 0.28 -1.1
17,362 + Ac3H11_3668 0.28 -0.3
17,362 + Ac3H11_3668 0.28 +0.8
17,362 + Ac3H11_3668 0.28 -0.0
17,362 + Ac3H11_3668 0.28 -0.4
17,362 + Ac3H11_3668 0.28 -0.9
17,362 + Ac3H11_3668 0.28 +1.1
17,362 + Ac3H11_3668 0.28 +0.7
17,362 + Ac3H11_3668 0.28 +0.5
17,362 + Ac3H11_3668 0.28 +0.3
17,362 + Ac3H11_3668 0.28 -1.7
17,362 + Ac3H11_3668 0.28 -0.4
17,363 - Ac3H11_3668 0.28 +0.0
17,363 - Ac3H11_3668 0.28 +0.4
17,363 - Ac3H11_3668 0.28 +1.1
17,363 - Ac3H11_3668 0.28 +0.0
17,363 - Ac3H11_3668 0.28 +0.6
17,363 - Ac3H11_3668 0.28 +0.2
17,363 - Ac3H11_3668 0.28 -0.9
17,377 + Ac3H11_3668 0.29 +0.3
17,377 + Ac3H11_3668 0.29 +0.2
17,377 + Ac3H11_3668 0.29 -0.2
17,378 - Ac3H11_3668 0.29 +0.2
17,378 - Ac3H11_3668 0.29 -0.3
17,378 - Ac3H11_3668 0.29 -0.3
17,378 - Ac3H11_3668 0.29 -0.0
17,378 - Ac3H11_3668 0.29 +0.1
17,378 - Ac3H11_3668 0.29 +0.2
17,378 - Ac3H11_3668 0.29 -0.8
17,378 - Ac3H11_3668 0.29 +0.4
17,529 + Ac3H11_3668 0.45 -0.3
17,638 + Ac3H11_3668 0.57 +0.1
17,638 + Ac3H11_3668 0.57 +0.5
17,638 + Ac3H11_3668 0.57 -0.1
17,638 + Ac3H11_3668 0.57 -3.6
17,638 + Ac3H11_3668 0.57 -2.4
17,638 + Ac3H11_3668 0.57 -0.5
17,638 + Ac3H11_3668 0.57 -0.8
17,638 + Ac3H11_3668 0.57 -0.5
17,638 + Ac3H11_3668 0.57 -0.0
17,638 + Ac3H11_3668 0.57 -0.6
17,638 + Ac3H11_3668 0.57 -1.0
17,638 + Ac3H11_3668 0.57 +0.3
17,638 + Ac3H11_3668 0.57 -0.4
17,638 + Ac3H11_3668 0.57 -0.2
17,638 + Ac3H11_3668 0.57 +0.1
17,638 + Ac3H11_3668 0.57 -0.5
17,638 + Ac3H11_3668 0.57 -0.4
17,638 + Ac3H11_3668 0.57 -0.5
17,638 + Ac3H11_3668 0.57 -0.1
17,639 - Ac3H11_3668 0.57 -0.1
17,639 - Ac3H11_3668 0.57 -1.0
17,639 - Ac3H11_3668 0.57 -0.4
17,639 - Ac3H11_3668 0.57 -0.5
17,639 - Ac3H11_3668 0.57 -0.0
17,639 - Ac3H11_3668 0.57 -0.4
17,639 - Ac3H11_3668 0.57 -1.8
17,639 - Ac3H11_3668 0.57 +0.4
17,639 - Ac3H11_3668 0.57 -0.9
17,639 - Ac3H11_3668 0.57 -0.3
17,639 - Ac3H11_3668 0.57 +0.5
17,668 + Ac3H11_3668 0.60 -1.4
17,668 + Ac3H11_3668 0.60 -0.0
17,668 + Ac3H11_3668 0.60 -0.3
17,668 + Ac3H11_3668 0.60 -1.3
17,669 - Ac3H11_3668 0.60 -0.8
17,669 - Ac3H11_3668 0.60 -0.4
17,669 - Ac3H11_3668 0.60 -0.5
17,707 + Ac3H11_3668 0.64 +0.2
17,707 + Ac3H11_3668 0.64 -0.4
17,707 + Ac3H11_3668 0.64 -0.5
17,707 + Ac3H11_3668 0.64 -0.6
17,707 + Ac3H11_3668 0.64 +1.1
17,707 + Ac3H11_3668 0.64 -1.1
17,707 + Ac3H11_3668 0.64 +0.0
17,707 + Ac3H11_3668 0.64 +0.5
17,707 + Ac3H11_3668 0.64 -2.0
17,707 + Ac3H11_3668 0.64 +0.7
17,707 + Ac3H11_3668 0.64 +0.9
17,708 - Ac3H11_3668 0.64 +0.2
17,708 - Ac3H11_3668 0.64 +0.1
17,708 - Ac3H11_3668 0.64 -1.3
17,708 - Ac3H11_3668 0.64 +1.0
17,708 - Ac3H11_3668 0.64 +0.1
17,708 - Ac3H11_3668 0.64 -0.9
17,708 - Ac3H11_3668 0.64 -1.7
17,708 - Ac3H11_3668 0.64 +0.4
17,708 - Ac3H11_3668 0.64 -0.8
17,728 + Ac3H11_3668 0.66 +0.0
17,728 + Ac3H11_3668 0.66 +0.5
17,728 + Ac3H11_3668 0.66 -0.7
17,728 + Ac3H11_3668 0.66 +0.3
17,728 + Ac3H11_3668 0.66 -0.4
17,728 + Ac3H11_3668 0.66 +0.8
17,728 + Ac3H11_3668 0.66 -0.7
17,729 - Ac3H11_3668 0.66 -1.1
17,729 - Ac3H11_3668 0.66 +0.3
17,729 - Ac3H11_3668 0.66 -1.2
17,821 + Ac3H11_3668 0.76 +0.2
17,822 - Ac3H11_3668 0.76 -0.2
17,935 + Ac3H11_3668 0.88 +1.9
17,936 - Ac3H11_3668 0.88 +0.2

Or see this region's nucleotide sequence