Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3664 and Ac3H11_3665 are separated by 97 nucleotides Ac3H11_3665 and Ac3H11_3666 are separated by 16 nucleotides Ac3H11_3666 and Ac3H11_3667 are separated by 63 nucleotides Ac3H11_3667 and Ac3H11_3668 are separated by 132 nucleotides
Ac3H11_3664 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2), at 12,791 to 15,070
_3664
Ac3H11_3665 - DNA-directed RNA polymerase omega subunit (EC 2.7.7.6), at 15,168 to 15,371
_3665
Ac3H11_3666 - Guanylate kinase (EC 2.7.4.8), at 15,388 to 15,981
_3666
Ac3H11_3667 - Protein YicC, at 16,045 to 16,962
_3667
Ac3H11_3668 - Serine/threonine protein kinase, at 17,095 to 18,054
_3668
Position (kb)
16
17 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 15.056 kb on - strand at 15.075 kb on + strand at 15.076 kb on - strand at 15.076 kb on - strand at 15.076 kb on - strand at 15.076 kb on - strand at 15.076 kb on - strand at 15.076 kb on - strand at 15.076 kb on - strand at 15.076 kb on - strand at 15.076 kb on - strand at 15.076 kb on - strand at 15.076 kb on - strand at 15.081 kb on + strand at 15.082 kb on - strand at 15.397 kb on - strand at 16.953 kb on - strand at 16.953 kb on - strand at 17.037 kb on + strand at 17.037 kb on + strand at 17.037 kb on + strand at 17.037 kb on + strand at 17.037 kb on + strand at 17.038 kb on - strand at 17.038 kb on - strand at 17.089 kb on + strand at 17.134 kb on + strand at 17.134 kb on + strand at 17.134 kb on + strand at 17.134 kb on + strand at 17.135 kb on - strand at 17.135 kb on - strand at 17.135 kb on - strand at 17.135 kb on - strand at 17.135 kb on - strand at 17.135 kb on - strand at 17.135 kb on - strand at 17.135 kb on - strand at 17.135 kb on - strand at 17.179 kb on + strand at 17.179 kb on + strand at 17.179 kb on + strand at 17.179 kb on + strand at 17.179 kb on + strand at 17.179 kb on + strand at 17.179 kb on + strand at 17.179 kb on + strand at 17.179 kb on + strand at 17.180 kb on - strand at 17.180 kb on - strand at 17.180 kb on - strand at 17.180 kb on - strand at 17.180 kb on - strand at 17.180 kb on - strand at 17.180 kb on - strand at 17.180 kb on - strand at 17.180 kb on - strand at 17.254 kb on + strand, within Ac3H11_3668 at 17.255 kb on - strand, within Ac3H11_3668 at 17.362 kb on + strand, within Ac3H11_3668 at 17.362 kb on + strand, within Ac3H11_3668 at 17.362 kb on + strand, within Ac3H11_3668 at 17.362 kb on + strand, within Ac3H11_3668 at 17.362 kb on + strand, within Ac3H11_3668 at 17.362 kb on + strand, within Ac3H11_3668 at 17.362 kb on + strand, within Ac3H11_3668 at 17.362 kb on + strand, within Ac3H11_3668 at 17.362 kb on + strand, within Ac3H11_3668 at 17.362 kb on + strand, within Ac3H11_3668 at 17.362 kb on + strand, within Ac3H11_3668 at 17.362 kb on + strand, within Ac3H11_3668 at 17.362 kb on + strand, within Ac3H11_3668 at 17.363 kb on - strand, within Ac3H11_3668 at 17.363 kb on - strand, within Ac3H11_3668 at 17.363 kb on - strand, within Ac3H11_3668 at 17.363 kb on - strand, within Ac3H11_3668 at 17.363 kb on - strand, within Ac3H11_3668 at 17.363 kb on - strand, within Ac3H11_3668 at 17.363 kb on - strand, within Ac3H11_3668 at 17.377 kb on + strand, within Ac3H11_3668 at 17.377 kb on + strand, within Ac3H11_3668 at 17.377 kb on + strand, within Ac3H11_3668 at 17.378 kb on - strand, within Ac3H11_3668 at 17.378 kb on - strand, within Ac3H11_3668 at 17.378 kb on - strand, within Ac3H11_3668 at 17.378 kb on - strand, within Ac3H11_3668 at 17.378 kb on - strand, within Ac3H11_3668 at 17.378 kb on - strand, within Ac3H11_3668 at 17.378 kb on - strand, within Ac3H11_3668 at 17.378 kb on - strand, within Ac3H11_3668 at 17.529 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.638 kb on + strand, within Ac3H11_3668 at 17.639 kb on - strand, within Ac3H11_3668 at 17.639 kb on - strand, within Ac3H11_3668 at 17.639 kb on - strand, within Ac3H11_3668 at 17.639 kb on - strand, within Ac3H11_3668 at 17.639 kb on - strand, within Ac3H11_3668 at 17.639 kb on - strand, within Ac3H11_3668 at 17.639 kb on - strand, within Ac3H11_3668 at 17.639 kb on - strand, within Ac3H11_3668 at 17.639 kb on - strand, within Ac3H11_3668 at 17.639 kb on - strand, within Ac3H11_3668 at 17.639 kb on - strand, within Ac3H11_3668 at 17.668 kb on + strand, within Ac3H11_3668 at 17.668 kb on + strand, within Ac3H11_3668 at 17.668 kb on + strand, within Ac3H11_3668 at 17.668 kb on + strand, within Ac3H11_3668 at 17.669 kb on - strand, within Ac3H11_3668 at 17.669 kb on - strand, within Ac3H11_3668 at 17.669 kb on - strand, within Ac3H11_3668 at 17.707 kb on + strand, within Ac3H11_3668 at 17.707 kb on + strand, within Ac3H11_3668 at 17.707 kb on + strand, within Ac3H11_3668 at 17.707 kb on + strand, within Ac3H11_3668 at 17.707 kb on + strand, within Ac3H11_3668 at 17.707 kb on + strand, within Ac3H11_3668 at 17.707 kb on + strand, within Ac3H11_3668 at 17.707 kb on + strand, within Ac3H11_3668 at 17.707 kb on + strand, within Ac3H11_3668 at 17.707 kb on + strand, within Ac3H11_3668 at 17.707 kb on + strand, within Ac3H11_3668 at 17.708 kb on - strand, within Ac3H11_3668 at 17.708 kb on - strand, within Ac3H11_3668 at 17.708 kb on - strand, within Ac3H11_3668 at 17.708 kb on - strand, within Ac3H11_3668 at 17.708 kb on - strand, within Ac3H11_3668 at 17.708 kb on - strand, within Ac3H11_3668 at 17.708 kb on - strand, within Ac3H11_3668 at 17.708 kb on - strand, within Ac3H11_3668 at 17.708 kb on - strand, within Ac3H11_3668 at 17.728 kb on + strand, within Ac3H11_3668 at 17.728 kb on + strand, within Ac3H11_3668 at 17.728 kb on + strand, within Ac3H11_3668 at 17.728 kb on + strand, within Ac3H11_3668 at 17.728 kb on + strand, within Ac3H11_3668 at 17.728 kb on + strand, within Ac3H11_3668 at 17.728 kb on + strand, within Ac3H11_3668 at 17.729 kb on - strand, within Ac3H11_3668 at 17.729 kb on - strand, within Ac3H11_3668 at 17.729 kb on - strand, within Ac3H11_3668 at 17.821 kb on + strand, within Ac3H11_3668 at 17.822 kb on - strand, within Ac3H11_3668 at 17.935 kb on + strand, within Ac3H11_3668 at 17.936 kb on - strand, within Ac3H11_3668
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 15,056 - +0.6 15,075 + +1.1 15,076 - -0.2 15,076 - +0.0 15,076 - +1.5 15,076 - +0.1 15,076 - +0.5 15,076 - -0.4 15,076 - -0.4 15,076 - +0.8 15,076 - -0.8 15,076 - +0.5 15,076 - +0.8 15,081 + +0.1 15,082 - -0.2 15,397 - +0.1 16,953 - +0.6 16,953 - +0.2 17,037 + +1.1 17,037 + -1.0 17,037 + -2.1 17,037 + +0.1 17,037 + -1.8 17,038 - +0.4 17,038 - -0.4 17,089 + -0.3 17,134 + -0.4 17,134 + +1.1 17,134 + +1.0 17,134 + +0.3 17,135 - -0.7 17,135 - -0.8 17,135 - -0.2 17,135 - +0.6 17,135 - +0.0 17,135 - -0.3 17,135 - -1.3 17,135 - +0.1 17,135 - +0.2 17,179 + +0.5 17,179 + -0.3 17,179 + -0.5 17,179 + -0.3 17,179 + +0.1 17,179 + +0.2 17,179 + -0.1 17,179 + -2.6 17,179 + -0.1 17,180 - -0.8 17,180 - -0.3 17,180 - +0.8 17,180 - +0.1 17,180 - -0.7 17,180 - -0.7 17,180 - +0.4 17,180 - -0.3 17,180 - -0.8 17,254 + Ac3H11_3668 0.17 -0.5 17,255 - Ac3H11_3668 0.17 +0.4 17,362 + Ac3H11_3668 0.28 +0.3 17,362 + Ac3H11_3668 0.28 -1.1 17,362 + Ac3H11_3668 0.28 -0.3 17,362 + Ac3H11_3668 0.28 +0.8 17,362 + Ac3H11_3668 0.28 -0.0 17,362 + Ac3H11_3668 0.28 -0.4 17,362 + Ac3H11_3668 0.28 -0.9 17,362 + Ac3H11_3668 0.28 +1.1 17,362 + Ac3H11_3668 0.28 +0.7 17,362 + Ac3H11_3668 0.28 +0.5 17,362 + Ac3H11_3668 0.28 +0.3 17,362 + Ac3H11_3668 0.28 -1.7 17,362 + Ac3H11_3668 0.28 -0.4 17,363 - Ac3H11_3668 0.28 +0.0 17,363 - Ac3H11_3668 0.28 +0.4 17,363 - Ac3H11_3668 0.28 +1.1 17,363 - Ac3H11_3668 0.28 +0.0 17,363 - Ac3H11_3668 0.28 +0.6 17,363 - Ac3H11_3668 0.28 +0.2 17,363 - Ac3H11_3668 0.28 -0.9 17,377 + Ac3H11_3668 0.29 +0.3 17,377 + Ac3H11_3668 0.29 +0.2 17,377 + Ac3H11_3668 0.29 -0.2 17,378 - Ac3H11_3668 0.29 +0.2 17,378 - Ac3H11_3668 0.29 -0.3 17,378 - Ac3H11_3668 0.29 -0.3 17,378 - Ac3H11_3668 0.29 -0.0 17,378 - Ac3H11_3668 0.29 +0.1 17,378 - Ac3H11_3668 0.29 +0.2 17,378 - Ac3H11_3668 0.29 -0.8 17,378 - Ac3H11_3668 0.29 +0.4 17,529 + Ac3H11_3668 0.45 -0.3 17,638 + Ac3H11_3668 0.57 +0.1 17,638 + Ac3H11_3668 0.57 +0.5 17,638 + Ac3H11_3668 0.57 -0.1 17,638 + Ac3H11_3668 0.57 -3.6 17,638 + Ac3H11_3668 0.57 -2.4 17,638 + Ac3H11_3668 0.57 -0.5 17,638 + Ac3H11_3668 0.57 -0.8 17,638 + Ac3H11_3668 0.57 -0.5 17,638 + Ac3H11_3668 0.57 -0.0 17,638 + Ac3H11_3668 0.57 -0.6 17,638 + Ac3H11_3668 0.57 -1.0 17,638 + Ac3H11_3668 0.57 +0.3 17,638 + Ac3H11_3668 0.57 -0.4 17,638 + Ac3H11_3668 0.57 -0.2 17,638 + Ac3H11_3668 0.57 +0.1 17,638 + Ac3H11_3668 0.57 -0.5 17,638 + Ac3H11_3668 0.57 -0.4 17,638 + Ac3H11_3668 0.57 -0.5 17,638 + Ac3H11_3668 0.57 -0.1 17,639 - Ac3H11_3668 0.57 -0.1 17,639 - Ac3H11_3668 0.57 -1.0 17,639 - Ac3H11_3668 0.57 -0.4 17,639 - Ac3H11_3668 0.57 -0.5 17,639 - Ac3H11_3668 0.57 -0.0 17,639 - Ac3H11_3668 0.57 -0.4 17,639 - Ac3H11_3668 0.57 -1.8 17,639 - Ac3H11_3668 0.57 +0.4 17,639 - Ac3H11_3668 0.57 -0.9 17,639 - Ac3H11_3668 0.57 -0.3 17,639 - Ac3H11_3668 0.57 +0.5 17,668 + Ac3H11_3668 0.60 -1.4 17,668 + Ac3H11_3668 0.60 -0.0 17,668 + Ac3H11_3668 0.60 -0.3 17,668 + Ac3H11_3668 0.60 -1.3 17,669 - Ac3H11_3668 0.60 -0.8 17,669 - Ac3H11_3668 0.60 -0.4 17,669 - Ac3H11_3668 0.60 -0.5 17,707 + Ac3H11_3668 0.64 +0.2 17,707 + Ac3H11_3668 0.64 -0.4 17,707 + Ac3H11_3668 0.64 -0.5 17,707 + Ac3H11_3668 0.64 -0.6 17,707 + Ac3H11_3668 0.64 +1.1 17,707 + Ac3H11_3668 0.64 -1.1 17,707 + Ac3H11_3668 0.64 +0.0 17,707 + Ac3H11_3668 0.64 +0.5 17,707 + Ac3H11_3668 0.64 -2.0 17,707 + Ac3H11_3668 0.64 +0.7 17,707 + Ac3H11_3668 0.64 +0.9 17,708 - Ac3H11_3668 0.64 +0.2 17,708 - Ac3H11_3668 0.64 +0.1 17,708 - Ac3H11_3668 0.64 -1.3 17,708 - Ac3H11_3668 0.64 +1.0 17,708 - Ac3H11_3668 0.64 +0.1 17,708 - Ac3H11_3668 0.64 -0.9 17,708 - Ac3H11_3668 0.64 -1.7 17,708 - Ac3H11_3668 0.64 +0.4 17,708 - Ac3H11_3668 0.64 -0.8 17,728 + Ac3H11_3668 0.66 +0.0 17,728 + Ac3H11_3668 0.66 +0.5 17,728 + Ac3H11_3668 0.66 -0.7 17,728 + Ac3H11_3668 0.66 +0.3 17,728 + Ac3H11_3668 0.66 -0.4 17,728 + Ac3H11_3668 0.66 +0.8 17,728 + Ac3H11_3668 0.66 -0.7 17,729 - Ac3H11_3668 0.66 -1.1 17,729 - Ac3H11_3668 0.66 +0.3 17,729 - Ac3H11_3668 0.66 -1.2 17,821 + Ac3H11_3668 0.76 +0.2 17,822 - Ac3H11_3668 0.76 -0.2 17,935 + Ac3H11_3668 0.88 +1.9 17,936 - Ac3H11_3668 0.88 +0.2
Or see this region's nucleotide sequence