Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3448

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3446 and Ac3H11_3447 are separated by 18 nucleotidesAc3H11_3447 and Ac3H11_3448 overlap by 105 nucleotidesAc3H11_3448 and Ac3H11_3449 are separated by 269 nucleotides Ac3H11_3446 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 128,719 to 130,410 _3446 Ac3H11_3447 - hypothetical protein, at 130,429 to 130,569 _3447 Ac3H11_3448 - Beta-lactamase class C and other penicillin binding proteins, at 130,465 to 131,691 _3448 Ac3H11_3449 - Shikimate kinase I (EC 2.7.1.71), at 131,961 to 132,503 _3449 Position (kb) 130 131 132Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 129.769 kb on + strand, within Ac3H11_3446at 130.051 kb on + strand, within Ac3H11_3446at 130.051 kb on + strand, within Ac3H11_3446at 130.052 kb on - strand, within Ac3H11_3446at 130.052 kb on - strand, within Ac3H11_3446at 130.135 kb on + strand, within Ac3H11_3446at 130.135 kb on + strand, within Ac3H11_3446at 130.135 kb on + strand, within Ac3H11_3446at 130.135 kb on + strand, within Ac3H11_3446at 130.135 kb on + strand, within Ac3H11_3446at 130.135 kb on + strand, within Ac3H11_3446at 130.135 kb on + strand, within Ac3H11_3446at 130.135 kb on + strand, within Ac3H11_3446at 130.135 kb on + strand, within Ac3H11_3446at 130.135 kb on + strand, within Ac3H11_3446at 130.136 kb on - strand, within Ac3H11_3446at 130.136 kb on - strand, within Ac3H11_3446at 130.136 kb on - strand, within Ac3H11_3446at 130.136 kb on - strand, within Ac3H11_3446at 130.292 kb on - strandat 130.292 kb on - strandat 130.450 kb on + strand, within Ac3H11_3447at 130.714 kb on + strand, within Ac3H11_3448at 130.714 kb on + strand, within Ac3H11_3448at 130.714 kb on + strand, within Ac3H11_3448at 130.715 kb on - strand, within Ac3H11_3448at 130.715 kb on - strand, within Ac3H11_3448at 130.715 kb on - strand, within Ac3H11_3448at 130.715 kb on - strand, within Ac3H11_3448at 130.715 kb on - strand, within Ac3H11_3448at 130.802 kb on - strand, within Ac3H11_3448at 130.915 kb on + strand, within Ac3H11_3448at 130.915 kb on + strand, within Ac3H11_3448at 130.916 kb on - strand, within Ac3H11_3448at 130.948 kb on + strand, within Ac3H11_3448at 131.050 kb on + strand, within Ac3H11_3448at 131.050 kb on + strand, within Ac3H11_3448at 131.050 kb on + strand, within Ac3H11_3448at 131.051 kb on - strand, within Ac3H11_3448at 131.051 kb on - strand, within Ac3H11_3448at 131.311 kb on + strand, within Ac3H11_3448at 131.312 kb on - strand, within Ac3H11_3448at 131.551 kb on + strand, within Ac3H11_3448at 131.552 kb on - strand, within Ac3H11_3448at 131.552 kb on - strand, within Ac3H11_3448at 131.677 kb on + strandat 131.677 kb on + strandat 131.677 kb on + strandat 131.677 kb on + strandat 131.677 kb on + strandat 131.677 kb on + strandat 131.678 kb on - strandat 131.678 kb on - strandat 131.678 kb on - strandat 131.678 kb on - strandat 131.678 kb on - strandat 131.879 kb on - strandat 131.960 kb on + strandat 131.960 kb on + strandat 131.960 kb on + strandat 131.960 kb on + strandat 131.960 kb on + strandat 131.961 kb on - strandat 131.961 kb on - strandat 131.961 kb on - strandat 131.961 kb on - strandat 131.961 kb on - strandat 131.961 kb on - strandat 131.961 kb on - strandat 132.261 kb on + strand, within Ac3H11_3449at 132.261 kb on + strand, within Ac3H11_3449at 132.261 kb on + strand, within Ac3H11_3449at 132.262 kb on - strand, within Ac3H11_3449at 132.363 kb on + strand, within Ac3H11_3449at 132.364 kb on - strand, within Ac3H11_3449at 132.402 kb on + strand, within Ac3H11_3449at 132.402 kb on + strand, within Ac3H11_3449at 132.402 kb on + strand, within Ac3H11_3449at 132.403 kb on - strand, within Ac3H11_3449at 132.403 kb on - strand, within Ac3H11_3449at 132.403 kb on - strand, within Ac3H11_3449at 132.403 kb on - strand, within Ac3H11_3449at 132.403 kb on - strand, within Ac3H11_3449at 132.403 kb on - strand, within Ac3H11_3449at 132.406 kb on + strand, within Ac3H11_3449at 132.407 kb on - strand, within Ac3H11_3449at 132.407 kb on - strand, within Ac3H11_3449at 132.512 kb on + strandat 132.512 kb on + strandat 132.512 kb on + strandat 132.512 kb on + strandat 132.513 kb on - strandat 132.513 kb on - strandat 132.513 kb on - strandat 132.513 kb on - strandat 132.536 kb on - strandat 132.572 kb on - strandat 132.580 kb on + strandat 132.581 kb on - strandat 132.581 kb on - strandat 132.638 kb on + strandat 132.638 kb on + strandat 132.638 kb on + strandat 132.638 kb on + strandat 132.639 kb on - strandat 132.639 kb on - strandat 132.639 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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129,769 + Ac3H11_3446 0.62 -0.7
130,051 + Ac3H11_3446 0.79 +0.8
130,051 + Ac3H11_3446 0.79 -0.1
130,052 - Ac3H11_3446 0.79 -1.1
130,052 - Ac3H11_3446 0.79 -0.8
130,135 + Ac3H11_3446 0.84 +0.9
130,135 + Ac3H11_3446 0.84 -0.1
130,135 + Ac3H11_3446 0.84 +0.1
130,135 + Ac3H11_3446 0.84 -1.1
130,135 + Ac3H11_3446 0.84 -0.0
130,135 + Ac3H11_3446 0.84 +0.2
130,135 + Ac3H11_3446 0.84 +2.1
130,135 + Ac3H11_3446 0.84 +0.1
130,135 + Ac3H11_3446 0.84 -0.5
130,135 + Ac3H11_3446 0.84 +0.2
130,136 - Ac3H11_3446 0.84 +0.5
130,136 - Ac3H11_3446 0.84 -0.3
130,136 - Ac3H11_3446 0.84 +0.8
130,136 - Ac3H11_3446 0.84 +0.8
130,292 - +1.0
130,292 - +0.3
130,450 + Ac3H11_3447 0.15 -0.6
130,714 + Ac3H11_3448 0.20 +0.1
130,714 + Ac3H11_3448 0.20 +0.1
130,714 + Ac3H11_3448 0.20 -0.2
130,715 - Ac3H11_3448 0.20 -0.4
130,715 - Ac3H11_3448 0.20 -0.3
130,715 - Ac3H11_3448 0.20 +0.5
130,715 - Ac3H11_3448 0.20 -0.7
130,715 - Ac3H11_3448 0.20 -0.1
130,802 - Ac3H11_3448 0.27 -2.2
130,915 + Ac3H11_3448 0.37 +1.0
130,915 + Ac3H11_3448 0.37 +0.7
130,916 - Ac3H11_3448 0.37 +0.4
130,948 + Ac3H11_3448 0.39 -0.2
131,050 + Ac3H11_3448 0.48 +0.8
131,050 + Ac3H11_3448 0.48 -0.4
131,050 + Ac3H11_3448 0.48 -0.1
131,051 - Ac3H11_3448 0.48 +0.7
131,051 - Ac3H11_3448 0.48 -0.3
131,311 + Ac3H11_3448 0.69 +0.1
131,312 - Ac3H11_3448 0.69 +0.1
131,551 + Ac3H11_3448 0.89 +2.0
131,552 - Ac3H11_3448 0.89 +0.7
131,552 - Ac3H11_3448 0.89 -0.7
131,677 + +0.4
131,677 + +0.1
131,677 + +0.7
131,677 + -0.6
131,677 + +1.1
131,677 + -0.2
131,678 - +0.4
131,678 - -0.2
131,678 - +1.4
131,678 - -0.2
131,678 - -0.1
131,879 - -0.2
131,960 + -0.5
131,960 + -0.8
131,960 + -1.4
131,960 + +0.2
131,960 + -0.6
131,961 - -3.7
131,961 - -3.3
131,961 - -1.2
131,961 - -2.7
131,961 - -4.6
131,961 - -2.6
131,961 - -3.3
132,261 + Ac3H11_3449 0.55 +0.4
132,261 + Ac3H11_3449 0.55 -2.6
132,261 + Ac3H11_3449 0.55 -4.5
132,262 - Ac3H11_3449 0.55 -2.7
132,363 + Ac3H11_3449 0.74 -3.1
132,364 - Ac3H11_3449 0.74 -4.3
132,402 + Ac3H11_3449 0.81 -3.4
132,402 + Ac3H11_3449 0.81 -1.6
132,402 + Ac3H11_3449 0.81 -2.5
132,403 - Ac3H11_3449 0.81 -2.4
132,403 - Ac3H11_3449 0.81 -3.3
132,403 - Ac3H11_3449 0.81 -3.7
132,403 - Ac3H11_3449 0.81 -2.1
132,403 - Ac3H11_3449 0.81 -4.1
132,403 - Ac3H11_3449 0.81 -3.9
132,406 + Ac3H11_3449 0.82 -3.7
132,407 - Ac3H11_3449 0.82 -1.6
132,407 - Ac3H11_3449 0.82 -3.6
132,512 + -0.4
132,512 + -1.2
132,512 + -1.8
132,512 + +0.6
132,513 - -1.2
132,513 - +0.8
132,513 - +1.1
132,513 - -0.1
132,536 - -0.7
132,572 - +0.3
132,580 + +0.7
132,581 - +0.1
132,581 - +1.4
132,638 + -0.3
132,638 + +1.0
132,638 + +0.4
132,638 + +0.0
132,639 - -0.8
132,639 - +1.0
132,639 - -0.5

Or see this region's nucleotide sequence