Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2203

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2202 and Ac3H11_2203 are separated by 2 nucleotidesAc3H11_2203 and Ac3H11_2204 are separated by 90 nucleotidesAc3H11_2204 and Ac3H11_2205 are separated by 140 nucleotides Ac3H11_2202 - Thymidine phosphorylase (EC 2.4.2.4), at 430,808 to 432,415 _2202 Ac3H11_2203 - Ribose-phosphate pyrophosphokinase (EC 2.7.6.1), at 432,418 to 433,329 _2203 Ac3H11_2204 - Isochorismatase (EC 3.3.2.1), at 433,420 to 434,022 _2204 Ac3H11_2205 - Superoxide dismutase [Mn] (EC 1.15.1.1), at 434,163 to 435,089 _2205 Position (kb) 432 433 434Strain fitness (log2 ratio) -2 -1 0 1 2 3at 431.576 kb on + strand, within Ac3H11_2202at 431.577 kb on - strand, within Ac3H11_2202at 431.807 kb on + strand, within Ac3H11_2202at 431.807 kb on + strand, within Ac3H11_2202at 431.808 kb on - strand, within Ac3H11_2202at 431.808 kb on - strand, within Ac3H11_2202at 431.808 kb on - strand, within Ac3H11_2202at 431.808 kb on - strand, within Ac3H11_2202at 432.188 kb on + strand, within Ac3H11_2202at 432.188 kb on + strand, within Ac3H11_2202at 432.188 kb on + strand, within Ac3H11_2202at 432.188 kb on + strand, within Ac3H11_2202at 432.189 kb on - strand, within Ac3H11_2202at 432.189 kb on - strand, within Ac3H11_2202at 432.189 kb on - strand, within Ac3H11_2202at 432.296 kb on + strandat 432.297 kb on - strandat 432.448 kb on + strandat 432.448 kb on + strandat 432.449 kb on - strandat 432.449 kb on - strandat 432.449 kb on - strandat 432.449 kb on - strandat 432.449 kb on - strandat 432.449 kb on - strandat 432.449 kb on - strandat 432.657 kb on + strand, within Ac3H11_2203at 432.658 kb on - strand, within Ac3H11_2203at 432.703 kb on + strand, within Ac3H11_2203at 432.703 kb on + strand, within Ac3H11_2203at 432.703 kb on + strand, within Ac3H11_2203at 432.704 kb on - strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.714 kb on + strand, within Ac3H11_2203at 432.714 kb on + strand, within Ac3H11_2203at 432.714 kb on + strand, within Ac3H11_2203at 432.714 kb on + strand, within Ac3H11_2203at 432.714 kb on + strand, within Ac3H11_2203at 432.715 kb on - strand, within Ac3H11_2203at 432.715 kb on - strand, within Ac3H11_2203at 432.715 kb on - strand, within Ac3H11_2203at 432.715 kb on - strand, within Ac3H11_2203at 432.715 kb on - strand, within Ac3H11_2203at 432.873 kb on - strand, within Ac3H11_2203at 432.873 kb on - strand, within Ac3H11_2203at 433.327 kb on + strandat 433.327 kb on + strandat 433.328 kb on - strandat 433.328 kb on - strandat 433.463 kb on - strandat 434.039 kb on + strandat 434.039 kb on + strandat 434.226 kb on + strandat 434.226 kb on + strandat 434.226 kb on + strandat 434.226 kb on + strandat 434.227 kb on - strandat 434.227 kb on - strandat 434.227 kb on - strandat 434.305 kb on + strand, within Ac3H11_2205at 434.305 kb on + strand, within Ac3H11_2205at 434.305 kb on + strand, within Ac3H11_2205at 434.306 kb on - strand, within Ac3H11_2205at 434.314 kb on + strand, within Ac3H11_2205at 434.315 kb on - strand, within Ac3H11_2205at 434.315 kb on - strand, within Ac3H11_2205at 434.315 kb on - strand, within Ac3H11_2205

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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431,576 + Ac3H11_2202 0.48 +1.1
431,577 - Ac3H11_2202 0.48 -0.1
431,807 + Ac3H11_2202 0.62 +0.1
431,807 + Ac3H11_2202 0.62 +0.3
431,808 - Ac3H11_2202 0.62 +0.6
431,808 - Ac3H11_2202 0.62 +1.8
431,808 - Ac3H11_2202 0.62 -0.5
431,808 - Ac3H11_2202 0.62 -0.4
432,188 + Ac3H11_2202 0.86 +1.2
432,188 + Ac3H11_2202 0.86 +0.8
432,188 + Ac3H11_2202 0.86 -0.2
432,188 + Ac3H11_2202 0.86 -1.5
432,189 - Ac3H11_2202 0.86 -0.1
432,189 - Ac3H11_2202 0.86 +1.6
432,189 - Ac3H11_2202 0.86 -0.8
432,296 + +0.6
432,297 - +1.1
432,448 + +0.6
432,448 + +0.6
432,449 - -0.2
432,449 - +0.5
432,449 - +0.6
432,449 - -0.1
432,449 - -2.2
432,449 - +0.2
432,449 - -0.5
432,657 + Ac3H11_2203 0.26 +3.4
432,658 - Ac3H11_2203 0.26 +0.3
432,703 + Ac3H11_2203 0.31 -0.0
432,703 + Ac3H11_2203 0.31 -0.2
432,703 + Ac3H11_2203 0.31 +0.4
432,704 - Ac3H11_2203 0.31 -0.1
432,712 + Ac3H11_2203 0.32 +0.3
432,712 + Ac3H11_2203 0.32 +1.1
432,712 + Ac3H11_2203 0.32 -0.3
432,712 + Ac3H11_2203 0.32 -0.2
432,712 + Ac3H11_2203 0.32 -0.5
432,712 + Ac3H11_2203 0.32 +1.2
432,712 + Ac3H11_2203 0.32 +0.5
432,712 + Ac3H11_2203 0.32 +0.6
432,712 + Ac3H11_2203 0.32 +0.0
432,712 + Ac3H11_2203 0.32 +0.2
432,712 + Ac3H11_2203 0.32 +0.4
432,712 + Ac3H11_2203 0.32 -1.1
432,712 + Ac3H11_2203 0.32 +0.6
432,713 - Ac3H11_2203 0.32 +0.7
432,713 - Ac3H11_2203 0.32 -0.9
432,713 - Ac3H11_2203 0.32 +1.0
432,713 - Ac3H11_2203 0.32 -0.1
432,713 - Ac3H11_2203 0.32 -1.9
432,713 - Ac3H11_2203 0.32 +0.5
432,713 - Ac3H11_2203 0.32 +0.3
432,713 - Ac3H11_2203 0.32 -0.1
432,713 - Ac3H11_2203 0.32 +0.9
432,714 + Ac3H11_2203 0.32 +0.4
432,714 + Ac3H11_2203 0.32 +0.4
432,714 + Ac3H11_2203 0.32 +0.2
432,714 + Ac3H11_2203 0.32 -0.0
432,714 + Ac3H11_2203 0.32 -0.0
432,715 - Ac3H11_2203 0.33 +0.6
432,715 - Ac3H11_2203 0.33 +0.3
432,715 - Ac3H11_2203 0.33 -1.6
432,715 - Ac3H11_2203 0.33 -0.2
432,715 - Ac3H11_2203 0.33 +1.6
432,873 - Ac3H11_2203 0.50 +0.9
432,873 - Ac3H11_2203 0.50 -0.7
433,327 + -0.3
433,327 + -1.0
433,328 - -1.4
433,328 - -0.2
433,463 - +0.5
434,039 + -0.6
434,039 + -0.1
434,226 + +0.8
434,226 + +0.7
434,226 + -1.9
434,226 + +0.9
434,227 - -0.9
434,227 - +0.5
434,227 - -0.3
434,305 + Ac3H11_2205 0.15 -2.7
434,305 + Ac3H11_2205 0.15 +0.2
434,305 + Ac3H11_2205 0.15 +0.7
434,306 - Ac3H11_2205 0.15 +0.1
434,314 + Ac3H11_2205 0.16 -0.2
434,315 - Ac3H11_2205 0.16 -0.7
434,315 - Ac3H11_2205 0.16 +0.1
434,315 - Ac3H11_2205 0.16 +2.9

Or see this region's nucleotide sequence