Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1802

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1801 and Ac3H11_1802 are separated by 9 nucleotidesAc3H11_1802 and Ac3H11_1803 are separated by 19 nucleotidesAc3H11_1803 and Ac3H11_1804 are separated by 89 nucleotides Ac3H11_1801 - HflK protein, at 22,119 to 23,438 _1801 Ac3H11_1802 - HflC protein, at 23,448 to 24,356 _1802 Ac3H11_1803 - Putative inner membrane protein YjeT (clustered with HflC), at 24,376 to 24,564 _1803 Ac3H11_1804 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 24,654 to 25,802 _1804 Position (kb) 23 24 25Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 22.503 kb on + strand, within Ac3H11_1801at 22.503 kb on + strand, within Ac3H11_1801at 22.503 kb on + strand, within Ac3H11_1801at 22.504 kb on - strand, within Ac3H11_1801at 22.504 kb on - strand, within Ac3H11_1801at 22.504 kb on - strand, within Ac3H11_1801at 22.696 kb on - strand, within Ac3H11_1801at 22.881 kb on + strand, within Ac3H11_1801at 22.881 kb on + strand, within Ac3H11_1801at 22.881 kb on + strand, within Ac3H11_1801at 22.882 kb on - strand, within Ac3H11_1801at 23.020 kb on - strand, within Ac3H11_1801at 23.020 kb on - strand, within Ac3H11_1801at 23.085 kb on + strand, within Ac3H11_1801at 23.085 kb on + strand, within Ac3H11_1801at 23.085 kb on + strand, within Ac3H11_1801at 23.085 kb on + strand, within Ac3H11_1801at 23.085 kb on + strand, within Ac3H11_1801at 23.085 kb on + strand, within Ac3H11_1801at 23.151 kb on + strand, within Ac3H11_1801at 23.151 kb on + strand, within Ac3H11_1801at 23.187 kb on + strand, within Ac3H11_1801at 23.187 kb on + strand, within Ac3H11_1801at 23.187 kb on + strand, within Ac3H11_1801at 23.188 kb on - strand, within Ac3H11_1801at 23.188 kb on - strand, within Ac3H11_1801at 23.211 kb on + strand, within Ac3H11_1801at 23.212 kb on - strand, within Ac3H11_1801at 23.212 kb on - strand, within Ac3H11_1801at 23.212 kb on - strand, within Ac3H11_1801at 23.212 kb on - strand, within Ac3H11_1801at 23.255 kb on + strand, within Ac3H11_1801at 23.255 kb on + strand, within Ac3H11_1801at 23.256 kb on - strand, within Ac3H11_1801at 23.265 kb on + strand, within Ac3H11_1801at 23.265 kb on + strand, within Ac3H11_1801at 23.265 kb on + strand, within Ac3H11_1801at 23.265 kb on + strand, within Ac3H11_1801at 23.265 kb on + strand, within Ac3H11_1801at 23.465 kb on + strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.547 kb on + strand, within Ac3H11_1802at 23.547 kb on + strand, within Ac3H11_1802at 23.547 kb on + strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.715 kb on + strand, within Ac3H11_1802at 23.715 kb on + strand, within Ac3H11_1802at 23.715 kb on + strand, within Ac3H11_1802at 23.716 kb on - strand, within Ac3H11_1802at 23.716 kb on - strand, within Ac3H11_1802at 23.716 kb on - strand, within Ac3H11_1802at 23.716 kb on - strand, within Ac3H11_1802at 23.748 kb on + strand, within Ac3H11_1802at 23.749 kb on - strand, within Ac3H11_1802at 23.749 kb on - strand, within Ac3H11_1802at 23.749 kb on - strand, within Ac3H11_1802at 23.957 kb on + strand, within Ac3H11_1802at 23.958 kb on - strand, within Ac3H11_1802at 23.958 kb on - strand, within Ac3H11_1802at 23.958 kb on - strand, within Ac3H11_1802at 23.973 kb on + strand, within Ac3H11_1802at 23.973 kb on + strand, within Ac3H11_1802at 23.973 kb on + strand, within Ac3H11_1802at 23.973 kb on + strand, within Ac3H11_1802at 23.974 kb on - strand, within Ac3H11_1802at 23.974 kb on - strand, within Ac3H11_1802at 23.974 kb on - strand, within Ac3H11_1802at 23.974 kb on - strand, within Ac3H11_1802at 24.123 kb on + strand, within Ac3H11_1802at 24.123 kb on + strand, within Ac3H11_1802at 24.178 kb on - strand, within Ac3H11_1802at 24.237 kb on + strand, within Ac3H11_1802at 24.238 kb on - strand, within Ac3H11_1802at 24.238 kb on - strand, within Ac3H11_1802at 24.238 kb on - strand, within Ac3H11_1802at 24.238 kb on - strand, within Ac3H11_1802at 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.509 kb on + strand, within Ac3H11_1803at 24.510 kb on - strandat 24.510 kb on - strand, within Ac3H11_1803at 24.562 kb on + strandat 24.585 kb on + strandat 24.619 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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22,503 + Ac3H11_1801 0.29 -3.3
22,503 + Ac3H11_1801 0.29 -2.5
22,503 + Ac3H11_1801 0.29 -0.6
22,504 - Ac3H11_1801 0.29 -1.1
22,504 - Ac3H11_1801 0.29 -0.9
22,504 - Ac3H11_1801 0.29 -2.4
22,696 - Ac3H11_1801 0.44 -1.1
22,881 + Ac3H11_1801 0.58 -0.7
22,881 + Ac3H11_1801 0.58 -0.3
22,881 + Ac3H11_1801 0.58 -1.7
22,882 - Ac3H11_1801 0.58 +2.0
23,020 - Ac3H11_1801 0.68 -2.7
23,020 - Ac3H11_1801 0.68 -2.9
23,085 + Ac3H11_1801 0.73 -3.2
23,085 + Ac3H11_1801 0.73 -3.2
23,085 + Ac3H11_1801 0.73 -2.4
23,085 + Ac3H11_1801 0.73 -1.9
23,085 + Ac3H11_1801 0.73 -1.7
23,085 + Ac3H11_1801 0.73 -0.7
23,151 + Ac3H11_1801 0.78 -2.5
23,151 + Ac3H11_1801 0.78 -0.8
23,187 + Ac3H11_1801 0.81 -2.4
23,187 + Ac3H11_1801 0.81 -3.0
23,187 + Ac3H11_1801 0.81 -2.2
23,188 - Ac3H11_1801 0.81 -1.8
23,188 - Ac3H11_1801 0.81 -0.4
23,211 + Ac3H11_1801 0.83 -0.7
23,212 - Ac3H11_1801 0.83 -2.7
23,212 - Ac3H11_1801 0.83 -2.1
23,212 - Ac3H11_1801 0.83 -1.7
23,212 - Ac3H11_1801 0.83 -1.0
23,255 + Ac3H11_1801 0.86 -0.8
23,255 + Ac3H11_1801 0.86 -1.6
23,256 - Ac3H11_1801 0.86 -3.1
23,265 + Ac3H11_1801 0.87 -1.2
23,265 + Ac3H11_1801 0.87 -2.0
23,265 + Ac3H11_1801 0.87 -2.0
23,265 + Ac3H11_1801 0.87 -1.8
23,265 + Ac3H11_1801 0.87 -2.5
23,465 + -0.9
23,466 - -2.2
23,466 - -1.8
23,466 - -1.2
23,466 - -2.5
23,466 - -0.8
23,466 - -3.9
23,547 + Ac3H11_1802 0.11 -1.6
23,547 + Ac3H11_1802 0.11 -2.7
23,547 + Ac3H11_1802 0.11 -1.3
23,548 - Ac3H11_1802 0.11 -1.0
23,548 - Ac3H11_1802 0.11 -0.0
23,548 - Ac3H11_1802 0.11 -0.4
23,548 - Ac3H11_1802 0.11 -2.1
23,548 - Ac3H11_1802 0.11 -1.8
23,548 - Ac3H11_1802 0.11 -1.5
23,548 - Ac3H11_1802 0.11 -1.3
23,628 + Ac3H11_1802 0.20 -3.6
23,628 + Ac3H11_1802 0.20 -2.2
23,628 + Ac3H11_1802 0.20 -2.7
23,628 + Ac3H11_1802 0.20 -1.6
23,628 + Ac3H11_1802 0.20 -4.0
23,628 + Ac3H11_1802 0.20 -2.2
23,629 - Ac3H11_1802 0.20 -3.4
23,629 - Ac3H11_1802 0.20 -2.0
23,629 - Ac3H11_1802 0.20 -1.6
23,629 - Ac3H11_1802 0.20 -2.0
23,629 - Ac3H11_1802 0.20 -2.1
23,629 - Ac3H11_1802 0.20 -2.8
23,629 - Ac3H11_1802 0.20 -5.2
23,629 - Ac3H11_1802 0.20 -3.1
23,629 - Ac3H11_1802 0.20 -0.8
23,715 + Ac3H11_1802 0.29 +0.6
23,715 + Ac3H11_1802 0.29 -2.7
23,715 + Ac3H11_1802 0.29 -2.0
23,716 - Ac3H11_1802 0.29 -0.9
23,716 - Ac3H11_1802 0.29 -3.1
23,716 - Ac3H11_1802 0.29 -2.0
23,716 - Ac3H11_1802 0.29 -1.9
23,748 + Ac3H11_1802 0.33 -4.6
23,749 - Ac3H11_1802 0.33 -2.7
23,749 - Ac3H11_1802 0.33 -2.1
23,749 - Ac3H11_1802 0.33 -2.0
23,957 + Ac3H11_1802 0.56 -3.2
23,958 - Ac3H11_1802 0.56 -2.0
23,958 - Ac3H11_1802 0.56 -3.1
23,958 - Ac3H11_1802 0.56 -1.8
23,973 + Ac3H11_1802 0.58 -1.2
23,973 + Ac3H11_1802 0.58 -2.9
23,973 + Ac3H11_1802 0.58 -1.0
23,973 + Ac3H11_1802 0.58 -2.3
23,974 - Ac3H11_1802 0.58 -1.4
23,974 - Ac3H11_1802 0.58 -1.3
23,974 - Ac3H11_1802 0.58 -2.0
23,974 - Ac3H11_1802 0.58 -1.6
24,123 + Ac3H11_1802 0.74 -3.9
24,123 + Ac3H11_1802 0.74 -0.6
24,178 - Ac3H11_1802 0.80 -1.0
24,237 + Ac3H11_1802 0.87 -2.3
24,238 - Ac3H11_1802 0.87 -2.2
24,238 - Ac3H11_1802 0.87 -2.1
24,238 - Ac3H11_1802 0.87 -1.1
24,238 - Ac3H11_1802 0.87 -0.2
24,354 + -0.5
24,354 + -0.2
24,354 + +0.5
24,354 + -1.8
24,354 + +0.5
24,354 + -0.1
24,354 + +2.0
24,355 - +2.6
24,355 - +1.4
24,355 - +0.6
24,355 - +0.5
24,355 - -0.1
24,355 - +0.1
24,509 + Ac3H11_1803 0.70 +0.4
24,510 - +1.0
24,510 - Ac3H11_1803 0.71 +1.2
24,562 + -0.2
24,585 + -0.7
24,619 + -0.8

Or see this region's nucleotide sequence