Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25900

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25895 and AO353_25900 are separated by 15 nucleotidesAO353_25900 and AO353_25905 are separated by 44 nucleotides AO353_25895: AO353_25895 - ABC transporter ATP-binding protein, at 5,710,447 to 5,711,550 _25895 AO353_25900: AO353_25900 - mannitol dehydrogenase, at 5,711,566 to 5,713,041 _25900 AO353_25905: AO353_25905 - xylulose kinase, at 5,713,086 to 5,714,579 _25905 Position (kb) 5711 5712 5713 5714Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5710.569 kb on + strand, within AO353_25895at 5710.570 kb on - strand, within AO353_25895at 5710.570 kb on - strand, within AO353_25895at 5710.696 kb on + strand, within AO353_25895at 5710.696 kb on + strand, within AO353_25895at 5710.696 kb on + strand, within AO353_25895at 5710.705 kb on + strand, within AO353_25895at 5710.955 kb on + strand, within AO353_25895at 5710.955 kb on + strand, within AO353_25895at 5710.986 kb on + strand, within AO353_25895at 5711.012 kb on - strand, within AO353_25895at 5711.012 kb on - strand, within AO353_25895at 5711.012 kb on - strand, within AO353_25895at 5711.012 kb on - strand, within AO353_25895at 5711.012 kb on - strand, within AO353_25895at 5711.111 kb on - strand, within AO353_25895at 5711.178 kb on + strand, within AO353_25895at 5711.179 kb on - strand, within AO353_25895at 5711.498 kb on + strandat 5711.498 kb on + strandat 5711.498 kb on + strandat 5711.499 kb on - strandat 5711.499 kb on - strandat 5711.499 kb on - strandat 5711.499 kb on - strandat 5711.649 kb on + strandat 5711.695 kb on + strandat 5711.696 kb on - strandat 5711.696 kb on - strandat 5711.696 kb on - strandat 5711.696 kb on - strandat 5711.696 kb on - strandat 5711.698 kb on + strandat 5711.698 kb on + strandat 5711.699 kb on - strandat 5711.699 kb on - strandat 5711.699 kb on - strandat 5711.699 kb on - strandat 5711.699 kb on - strandat 5711.718 kb on + strand, within AO353_25900at 5711.807 kb on - strand, within AO353_25900at 5711.807 kb on - strand, within AO353_25900at 5711.807 kb on - strandat 5711.852 kb on + strand, within AO353_25900at 5711.852 kb on + strand, within AO353_25900at 5711.853 kb on - strand, within AO353_25900at 5711.972 kb on - strand, within AO353_25900at 5712.323 kb on + strand, within AO353_25900at 5712.323 kb on + strand, within AO353_25900at 5712.324 kb on - strand, within AO353_25900at 5712.324 kb on - strand, within AO353_25900at 5712.324 kb on - strand, within AO353_25900at 5712.324 kb on - strand, within AO353_25900at 5712.324 kb on - strand, within AO353_25900at 5712.324 kb on - strand, within AO353_25900at 5712.436 kb on + strand, within AO353_25900at 5712.487 kb on + strand, within AO353_25900at 5712.487 kb on + strand, within AO353_25900at 5712.487 kb on + strand, within AO353_25900at 5712.488 kb on - strand, within AO353_25900at 5712.488 kb on - strandat 5712.488 kb on - strand, within AO353_25900at 5712.553 kb on + strand, within AO353_25900at 5712.553 kb on + strand, within AO353_25900at 5712.553 kb on + strand, within AO353_25900at 5712.554 kb on - strand, within AO353_25900at 5712.554 kb on - strand, within AO353_25900at 5712.554 kb on - strand, within AO353_25900at 5712.565 kb on + strand, within AO353_25900at 5712.565 kb on + strand, within AO353_25900at 5712.566 kb on - strand, within AO353_25900at 5712.566 kb on - strand, within AO353_25900at 5712.566 kb on - strand, within AO353_25900at 5712.566 kb on - strand, within AO353_25900at 5712.567 kb on + strand, within AO353_25900at 5712.625 kb on + strand, within AO353_25900at 5712.626 kb on - strand, within AO353_25900at 5712.626 kb on - strand, within AO353_25900at 5712.726 kb on - strand, within AO353_25900at 5712.802 kb on + strand, within AO353_25900at 5712.803 kb on - strand, within AO353_25900at 5712.835 kb on + strand, within AO353_25900at 5712.835 kb on + strand, within AO353_25900at 5713.092 kb on - strandat 5713.092 kb on - strandat 5713.436 kb on - strand, within AO353_25905at 5713.497 kb on + strand, within AO353_25905at 5713.498 kb on - strand, within AO353_25905at 5713.499 kb on + strand, within AO353_25905at 5713.499 kb on + strand, within AO353_25905at 5713.499 kb on + strand, within AO353_25905at 5713.500 kb on - strand, within AO353_25905at 5713.500 kb on - strand, within AO353_25905at 5713.500 kb on - strand, within AO353_25905at 5713.500 kb on - strand, within AO353_25905at 5713.581 kb on + strand, within AO353_25905at 5713.590 kb on + strand, within AO353_25905at 5713.590 kb on + strand, within AO353_25905at 5713.590 kb on + strand, within AO353_25905at 5713.591 kb on - strand, within AO353_25905at 5713.644 kb on + strand, within AO353_25905at 5713.681 kb on + strand, within AO353_25905at 5713.682 kb on - strand, within AO353_25905at 5713.682 kb on - strand, within AO353_25905at 5713.682 kb on - strand, within AO353_25905at 5713.908 kb on + strand, within AO353_25905at 5713.908 kb on + strand, within AO353_25905at 5713.908 kb on + strand, within AO353_25905at 5713.908 kb on + strand, within AO353_25905at 5713.908 kb on + strand, within AO353_25905at 5713.908 kb on + strand, within AO353_25905at 5713.909 kb on - strand, within AO353_25905at 5713.909 kb on - strand, within AO353_25905at 5713.914 kb on + strand, within AO353_25905

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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5,710,569 + AO353_25895 0.11 +1.5
5,710,570 - AO353_25895 0.11 +0.3
5,710,570 - AO353_25895 0.11 +1.0
5,710,696 + AO353_25895 0.23 -0.4
5,710,696 + AO353_25895 0.23 -0.3
5,710,696 + AO353_25895 0.23 +0.6
5,710,705 + AO353_25895 0.23 -1.9
5,710,955 + AO353_25895 0.46 +0.7
5,710,955 + AO353_25895 0.46 +1.5
5,710,986 + AO353_25895 0.49 -0.5
5,711,012 - AO353_25895 0.51 -0.9
5,711,012 - AO353_25895 0.51 -2.4
5,711,012 - AO353_25895 0.51 +0.2
5,711,012 - AO353_25895 0.51 -1.6
5,711,012 - AO353_25895 0.51 +0.9
5,711,111 - AO353_25895 0.60 +0.3
5,711,178 + AO353_25895 0.66 -0.7
5,711,179 - AO353_25895 0.66 +2.5
5,711,498 + -1.7
5,711,498 + +0.1
5,711,498 + -1.5
5,711,499 - -1.4
5,711,499 - +1.9
5,711,499 - +0.6
5,711,499 - -1.1
5,711,649 + -0.4
5,711,695 + +0.5
5,711,696 - -0.9
5,711,696 - -3.1
5,711,696 - -0.7
5,711,696 - -0.2
5,711,696 - -0.4
5,711,698 + -0.6
5,711,698 + +0.6
5,711,699 - +0.5
5,711,699 - +0.5
5,711,699 - +0.5
5,711,699 - +1.5
5,711,699 - +0.1
5,711,718 + AO353_25900 0.10 -0.1
5,711,807 - AO353_25900 0.16 -1.6
5,711,807 - AO353_25900 0.16 -1.4
5,711,807 - +3.0
5,711,852 + AO353_25900 0.19 +0.5
5,711,852 + AO353_25900 0.19 -0.4
5,711,853 - AO353_25900 0.19 -0.5
5,711,972 - AO353_25900 0.28 -1.7
5,712,323 + AO353_25900 0.51 -1.4
5,712,323 + AO353_25900 0.51 -0.2
5,712,324 - AO353_25900 0.51 -1.1
5,712,324 - AO353_25900 0.51 -0.0
5,712,324 - AO353_25900 0.51 +1.5
5,712,324 - AO353_25900 0.51 -0.6
5,712,324 - AO353_25900 0.51 +0.5
5,712,324 - AO353_25900 0.51 +0.7
5,712,436 + AO353_25900 0.59 -0.5
5,712,487 + AO353_25900 0.62 +0.1
5,712,487 + AO353_25900 0.62 +0.5
5,712,487 + AO353_25900 0.62 +3.5
5,712,488 - AO353_25900 0.62 -1.5
5,712,488 - +0.9
5,712,488 - AO353_25900 0.62 -1.2
5,712,553 + AO353_25900 0.67 -0.5
5,712,553 + AO353_25900 0.67 -0.5
5,712,553 + AO353_25900 0.67 -1.2
5,712,554 - AO353_25900 0.67 +0.5
5,712,554 - AO353_25900 0.67 -0.5
5,712,554 - AO353_25900 0.67 +0.9
5,712,565 + AO353_25900 0.68 -0.1
5,712,565 + AO353_25900 0.68 -0.5
5,712,566 - AO353_25900 0.68 -0.9
5,712,566 - AO353_25900 0.68 -1.7
5,712,566 - AO353_25900 0.68 -0.9
5,712,566 - AO353_25900 0.68 -0.7
5,712,567 + AO353_25900 0.68 -1.2
5,712,625 + AO353_25900 0.72 +0.0
5,712,626 - AO353_25900 0.72 +0.9
5,712,626 - AO353_25900 0.72 +0.5
5,712,726 - AO353_25900 0.79 -0.1
5,712,802 + AO353_25900 0.84 +0.5
5,712,803 - AO353_25900 0.84 -2.0
5,712,835 + AO353_25900 0.86 -1.2
5,712,835 + AO353_25900 0.86 +0.5
5,713,092 - -0.1
5,713,092 - +0.1
5,713,436 - AO353_25905 0.23 -0.9
5,713,497 + AO353_25905 0.28 -0.1
5,713,498 - AO353_25905 0.28 -0.4
5,713,499 + AO353_25905 0.28 +1.0
5,713,499 + AO353_25905 0.28 +0.3
5,713,499 + AO353_25905 0.28 +0.1
5,713,500 - AO353_25905 0.28 +0.4
5,713,500 - AO353_25905 0.28 +1.0
5,713,500 - AO353_25905 0.28 -0.7
5,713,500 - AO353_25905 0.28 -0.5
5,713,581 + AO353_25905 0.33 -0.2
5,713,590 + AO353_25905 0.34 -0.6
5,713,590 + AO353_25905 0.34 +2.5
5,713,590 + AO353_25905 0.34 +1.0
5,713,591 - AO353_25905 0.34 -0.1
5,713,644 + AO353_25905 0.37 +0.9
5,713,681 + AO353_25905 0.40 -0.7
5,713,682 - AO353_25905 0.40 -1.5
5,713,682 - AO353_25905 0.40 -0.4
5,713,682 - AO353_25905 0.40 +0.0
5,713,908 + AO353_25905 0.55 -0.0
5,713,908 + AO353_25905 0.55 -0.4
5,713,908 + AO353_25905 0.55 +0.6
5,713,908 + AO353_25905 0.55 -1.5
5,713,908 + AO353_25905 0.55 +0.1
5,713,908 + AO353_25905 0.55 +0.1
5,713,909 - AO353_25905 0.55 +1.5
5,713,909 - AO353_25905 0.55 +0.1
5,713,914 + AO353_25905 0.55 +0.1

Or see this region's nucleotide sequence