Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22075

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22065 and AO353_22070 are separated by 75 nucleotidesAO353_22070 and AO353_22075 are separated by 86 nucleotidesAO353_22075 and AO353_22080 overlap by 4 nucleotides AO353_22065: AO353_22065 - zinc-binding protein, at 4,831,841 to 4,832,245 _22065 AO353_22070: AO353_22070 - DnrE protein, at 4,832,321 to 4,832,998 _22070 AO353_22075: AO353_22075 - hypothetical protein, at 4,833,085 to 4,833,732 _22075 AO353_22080: AO353_22080 - histidine kinase, at 4,833,729 to 4,835,531 _22080 Position (kb) 4833 4834Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4832.217 kb on + strandat 4832.218 kb on - strandat 4832.294 kb on + strandat 4832.471 kb on + strand, within AO353_22070at 4832.471 kb on + strand, within AO353_22070at 4832.472 kb on - strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.565 kb on - strand, within AO353_22070at 4832.565 kb on - strand, within AO353_22070at 4832.565 kb on - strand, within AO353_22070at 4832.565 kb on - strand, within AO353_22070at 4832.565 kb on - strand, within AO353_22070at 4832.565 kb on - strand, within AO353_22070at 4832.713 kb on - strand, within AO353_22070at 4832.808 kb on + strand, within AO353_22070at 4832.973 kb on - strandat 4832.981 kb on - strandat 4833.003 kb on + strandat 4833.021 kb on + strandat 4833.021 kb on + strandat 4833.021 kb on + strandat 4833.021 kb on + strandat 4833.021 kb on + strandat 4833.021 kb on + strandat 4833.021 kb on + strandat 4833.022 kb on - strandat 4833.022 kb on - strandat 4833.022 kb on - strandat 4833.022 kb on - strandat 4833.024 kb on + strandat 4833.024 kb on + strandat 4833.024 kb on + strandat 4833.024 kb on + strandat 4833.024 kb on + strandat 4833.025 kb on - strandat 4833.025 kb on - strandat 4833.025 kb on - strandat 4833.025 kb on - strandat 4833.047 kb on + strandat 4833.047 kb on + strandat 4833.047 kb on + strandat 4833.047 kb on + strandat 4833.047 kb on + strandat 4833.047 kb on + strandat 4833.047 kb on + strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.064 kb on - strandat 4833.064 kb on - strandat 4833.153 kb on + strand, within AO353_22075at 4833.153 kb on + strand, within AO353_22075at 4833.377 kb on + strand, within AO353_22075at 4833.378 kb on - strand, within AO353_22075at 4833.378 kb on - strand, within AO353_22075at 4833.378 kb on - strand, within AO353_22075at 4833.416 kb on + strand, within AO353_22075at 4833.417 kb on - strand, within AO353_22075at 4833.497 kb on + strand, within AO353_22075at 4833.497 kb on + strand, within AO353_22075at 4833.498 kb on - strand, within AO353_22075at 4833.498 kb on - strand, within AO353_22075at 4833.498 kb on - strand, within AO353_22075at 4833.511 kb on + strand, within AO353_22075at 4833.697 kb on + strandat 4833.697 kb on + strandat 4833.740 kb on + strandat 4833.740 kb on + strandat 4833.741 kb on - strandat 4833.816 kb on + strandat 4833.816 kb on + strandat 4833.816 kb on + strandat 4833.817 kb on - strandat 4833.960 kb on + strand, within AO353_22080at 4833.960 kb on + strand, within AO353_22080at 4834.306 kb on + strand, within AO353_22080at 4834.626 kb on + strand, within AO353_22080at 4834.626 kb on + strand, within AO353_22080at 4834.626 kb on + strand, within AO353_22080at 4834.659 kb on + strand, within AO353_22080at 4834.659 kb on + strand, within AO353_22080at 4834.659 kb on + strand, within AO353_22080at 4834.659 kb on + strand, within AO353_22080at 4834.660 kb on - strand, within AO353_22080

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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4,832,217 + -0.6
4,832,218 - +0.0
4,832,294 + +0.8
4,832,471 + AO353_22070 0.22 +0.6
4,832,471 + AO353_22070 0.22 -1.4
4,832,472 - AO353_22070 0.22 +2.9
4,832,564 + AO353_22070 0.36 -0.4
4,832,564 + AO353_22070 0.36 +0.2
4,832,564 + AO353_22070 0.36 -1.0
4,832,564 + AO353_22070 0.36 -1.1
4,832,564 + AO353_22070 0.36 +1.3
4,832,564 + AO353_22070 0.36 +0.2
4,832,564 + AO353_22070 0.36 +0.3
4,832,564 + AO353_22070 0.36 +0.4
4,832,564 + AO353_22070 0.36 +1.6
4,832,564 + AO353_22070 0.36 -0.8
4,832,565 - AO353_22070 0.36 +1.3
4,832,565 - AO353_22070 0.36 -0.5
4,832,565 - AO353_22070 0.36 +3.2
4,832,565 - AO353_22070 0.36 +1.6
4,832,565 - AO353_22070 0.36 -1.5
4,832,565 - AO353_22070 0.36 -0.8
4,832,713 - AO353_22070 0.58 +0.1
4,832,808 + AO353_22070 0.72 -2.1
4,832,973 - -0.2
4,832,981 - +1.2
4,833,003 + -0.4
4,833,021 + -0.4
4,833,021 + -0.6
4,833,021 + +0.5
4,833,021 + +1.1
4,833,021 + -0.8
4,833,021 + -1.0
4,833,021 + +1.1
4,833,022 - -1.5
4,833,022 - +0.7
4,833,022 - +0.3
4,833,022 - +0.6
4,833,024 + +0.6
4,833,024 + -1.4
4,833,024 + +0.6
4,833,024 + +0.9
4,833,024 + -0.6
4,833,025 - +0.2
4,833,025 - +0.6
4,833,025 - +1.6
4,833,025 - +1.4
4,833,047 + -0.6
4,833,047 + -0.4
4,833,047 + -1.1
4,833,047 + +0.3
4,833,047 + -0.0
4,833,047 + -1.5
4,833,047 + -1.0
4,833,048 - +1.2
4,833,048 - -1.0
4,833,048 - +0.9
4,833,048 - +0.0
4,833,048 - +0.9
4,833,048 - -0.9
4,833,048 - -0.2
4,833,048 - +0.0
4,833,048 - +0.8
4,833,048 - -2.2
4,833,048 - +1.1
4,833,048 - -1.2
4,833,064 - +0.5
4,833,064 - -0.9
4,833,153 + AO353_22075 0.10 +0.9
4,833,153 + AO353_22075 0.10 +0.2
4,833,377 + AO353_22075 0.45 -0.3
4,833,378 - AO353_22075 0.45 -1.1
4,833,378 - AO353_22075 0.45 +0.8
4,833,378 - AO353_22075 0.45 +1.2
4,833,416 + AO353_22075 0.51 +1.0
4,833,417 - AO353_22075 0.51 +0.0
4,833,497 + AO353_22075 0.64 -0.5
4,833,497 + AO353_22075 0.64 +3.2
4,833,498 - AO353_22075 0.64 -0.4
4,833,498 - AO353_22075 0.64 -0.1
4,833,498 - AO353_22075 0.64 +0.7
4,833,511 + AO353_22075 0.66 -0.7
4,833,697 + -0.4
4,833,697 + +0.0
4,833,740 + -0.5
4,833,740 + -0.9
4,833,741 - -0.4
4,833,816 + +1.6
4,833,816 + +0.6
4,833,816 + -0.9
4,833,817 - -0.5
4,833,960 + AO353_22080 0.13 -0.5
4,833,960 + AO353_22080 0.13 -0.4
4,834,306 + AO353_22080 0.32 -0.2
4,834,626 + AO353_22080 0.50 +0.1
4,834,626 + AO353_22080 0.50 -0.7
4,834,626 + AO353_22080 0.50 -1.1
4,834,659 + AO353_22080 0.52 -1.5
4,834,659 + AO353_22080 0.52 -0.1
4,834,659 + AO353_22080 0.52 +1.0
4,834,659 + AO353_22080 0.52 +0.2
4,834,660 - AO353_22080 0.52 +2.0

Or see this region's nucleotide sequence