Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16540

Experiment: Ethanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_16535 and AO353_16540 are separated by 153 nucleotidesAO353_16540 and AO353_16545 are separated by 202 nucleotides AO353_16535: AO353_16535 - DNA polymerase III subunit alpha, at 3,670,505 to 3,674,026 _16535 AO353_16540: AO353_16540 - acetyl-CoA carboxylase subunit alpha, at 3,674,180 to 3,675,127 _16540 AO353_16545: AO353_16545 - tRNA(Ile)-lysidine synthetase, at 3,675,330 to 3,676,643 _16545 Position (kb) 3674 3675 3676Strain fitness (log2 ratio) -2 -1 0 1at 3674.045 kb on + strandat 3674.083 kb on + strandat 3675.116 kb on + strandat 3675.116 kb on + strandat 3675.116 kb on + strandat 3675.145 kb on + strandat 3675.145 kb on + strandat 3675.146 kb on - strandat 3675.190 kb on + strandat 3675.197 kb on + strandat 3675.197 kb on + strandat 3675.197 kb on + strandat 3675.198 kb on - strandat 3675.207 kb on + strandat 3675.207 kb on + strandat 3675.207 kb on + strandat 3675.208 kb on - strandat 3675.311 kb on + strandat 3675.312 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
remove
3,674,045 + +0.1
3,674,083 + -1.6
3,675,116 + +0.5
3,675,116 + +1.5
3,675,116 + -0.9
3,675,145 + -0.2
3,675,145 + -0.5
3,675,146 - -1.1
3,675,190 + +1.7
3,675,197 + -0.9
3,675,197 + +0.4
3,675,197 + +1.7
3,675,198 - -1.5
3,675,207 + -0.2
3,675,207 + -1.8
3,675,207 + +0.6
3,675,208 - +0.5
3,675,311 + -0.9
3,675,312 - -1.5

Or see this region's nucleotide sequence