Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20855 and ABZR86_RS20860 are separated by 187 nucleotides ABZR86_RS20860 and ABZR86_RS20865 are separated by 181 nucleotides ABZR86_RS20865 and ABZR86_RS20870 are separated by 35 nucleotides
ABZR86_RS20855: ABZR86_RS20855 - autotransporter domain-containing protein, at 141,859 to 143,103
_RS20855
ABZR86_RS20860: ABZR86_RS20860 - transcriptional regulator GcvA, at 143,291 to 144,202
_RS20860
ABZR86_RS20865: ABZR86_RS20865 - SDR family oxidoreductase, at 144,384 to 145,157
_RS20865
ABZR86_RS20870: ABZR86_RS20870 - alcohol dehydrogenase catalytic domain-containing protein, at 145,193 to 146,230
_RS20870
Position (kb) 143
144
145 Strain fitness (log2 ratio) -1
0
1
2 at 142.336 kb on - strand, within ABZR86_RS20855 at 142.336 kb on - strand, within ABZR86_RS20855 at 142.336 kb on - strand, within ABZR86_RS20855 at 142.343 kb on + strand, within ABZR86_RS20855 at 142.343 kb on + strand, within ABZR86_RS20855 at 142.344 kb on - strand, within ABZR86_RS20855 at 142.344 kb on - strand, within ABZR86_RS20855 at 142.344 kb on - strand, within ABZR86_RS20855 at 142.344 kb on - strand, within ABZR86_RS20855 at 142.344 kb on - strand, within ABZR86_RS20855 at 142.346 kb on + strand, within ABZR86_RS20855 at 142.347 kb on - strand, within ABZR86_RS20855 at 142.422 kb on - strand, within ABZR86_RS20855 at 142.422 kb on - strand, within ABZR86_RS20855 at 142.422 kb on - strand, within ABZR86_RS20855 at 142.443 kb on + strand, within ABZR86_RS20855 at 142.443 kb on + strand, within ABZR86_RS20855 at 142.443 kb on + strand, within ABZR86_RS20855 at 142.443 kb on + strand, within ABZR86_RS20855 at 142.478 kb on + strand, within ABZR86_RS20855 at 142.478 kb on + strand, within ABZR86_RS20855 at 142.479 kb on - strand, within ABZR86_RS20855 at 142.479 kb on - strand, within ABZR86_RS20855 at 142.542 kb on - strand, within ABZR86_RS20855 at 142.542 kb on - strand, within ABZR86_RS20855 at 143.148 kb on - strand at 143.169 kb on + strand at 143.170 kb on - strand at 143.234 kb on + strand at 143.234 kb on + strand at 143.234 kb on + strand at 143.234 kb on + strand at 143.234 kb on + strand at 143.235 kb on - strand at 143.241 kb on - strand at 143.241 kb on - strand at 143.293 kb on - strand at 143.364 kb on + strand at 143.364 kb on - strand at 143.377 kb on - strand at 143.377 kb on - strand at 143.377 kb on - strand at 143.377 kb on - strand at 143.502 kb on - strand, within ABZR86_RS20860 at 143.630 kb on + strand, within ABZR86_RS20860 at 143.701 kb on - strand, within ABZR86_RS20860 at 144.211 kb on - strand at 144.282 kb on + strand at 144.283 kb on - strand at 144.288 kb on + strand at 144.288 kb on + strand at 144.288 kb on + strand at 144.289 kb on - strand at 144.292 kb on + strand at 144.293 kb on - strand at 144.331 kb on - strand at 144.711 kb on + strand, within ABZR86_RS20865 at 144.711 kb on + strand, within ABZR86_RS20865 at 144.711 kb on + strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.852 kb on + strand, within ABZR86_RS20865 at 144.852 kb on + strand, within ABZR86_RS20865 at 144.921 kb on - strand, within ABZR86_RS20865 at 144.966 kb on + strand, within ABZR86_RS20865 at 144.966 kb on + strand, within ABZR86_RS20865 at 144.967 kb on - strand, within ABZR86_RS20865 at 144.967 kb on - strand, within ABZR86_RS20865
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 142,336 - ABZR86_RS20855 0.38 +0.5 142,336 - ABZR86_RS20855 0.38 +0.0 142,336 - ABZR86_RS20855 0.38 -0.6 142,343 + ABZR86_RS20855 0.39 +0.2 142,343 + ABZR86_RS20855 0.39 +1.0 142,344 - ABZR86_RS20855 0.39 +0.2 142,344 - ABZR86_RS20855 0.39 +0.5 142,344 - ABZR86_RS20855 0.39 +0.1 142,344 - ABZR86_RS20855 0.39 -1.0 142,344 - ABZR86_RS20855 0.39 -0.1 142,346 + ABZR86_RS20855 0.39 -0.2 142,347 - ABZR86_RS20855 0.39 -0.4 142,422 - ABZR86_RS20855 0.45 +0.1 142,422 - ABZR86_RS20855 0.45 -0.5 142,422 - ABZR86_RS20855 0.45 +0.9 142,443 + ABZR86_RS20855 0.47 +0.1 142,443 + ABZR86_RS20855 0.47 -0.4 142,443 + ABZR86_RS20855 0.47 -0.4 142,443 + ABZR86_RS20855 0.47 -0.5 142,478 + ABZR86_RS20855 0.50 -1.1 142,478 + ABZR86_RS20855 0.50 -0.7 142,479 - ABZR86_RS20855 0.50 +0.3 142,479 - ABZR86_RS20855 0.50 +0.2 142,542 - ABZR86_RS20855 0.55 -1.3 142,542 - ABZR86_RS20855 0.55 -1.1 143,148 - -0.8 143,169 + +0.1 143,170 - +0.5 143,234 + -0.3 143,234 + -0.1 143,234 + -0.3 143,234 + +0.4 143,234 + +0.4 143,235 - -0.6 143,241 - -0.1 143,241 - +0.1 143,293 - +1.3 143,364 + +0.2 143,364 - -0.1 143,377 - +0.9 143,377 - +0.3 143,377 - +2.1 143,377 - -1.0 143,502 - ABZR86_RS20860 0.23 +0.1 143,630 + ABZR86_RS20860 0.37 +2.2 143,701 - ABZR86_RS20860 0.45 +0.4 144,211 - +0.4 144,282 + -0.0 144,283 - +0.1 144,288 + -0.2 144,288 + -0.6 144,288 + -0.5 144,289 - -0.5 144,292 + -0.1 144,293 - -1.5 144,331 - +0.6 144,711 + ABZR86_RS20865 0.42 -0.3 144,711 + ABZR86_RS20865 0.42 +0.1 144,711 + ABZR86_RS20865 0.42 -0.4 144,712 - ABZR86_RS20865 0.42 +1.4 144,712 - ABZR86_RS20865 0.42 +1.0 144,712 - ABZR86_RS20865 0.42 -0.1 144,712 - ABZR86_RS20865 0.42 -1.1 144,852 + ABZR86_RS20865 0.60 +1.5 144,852 + ABZR86_RS20865 0.60 -0.8 144,921 - ABZR86_RS20865 0.69 +0.2 144,966 + ABZR86_RS20865 0.75 -0.1 144,966 + ABZR86_RS20865 0.75 +0.0 144,967 - ABZR86_RS20865 0.75 +0.5 144,967 - ABZR86_RS20865 0.75 +0.2
Or see this region's nucleotide sequence