Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS13875

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS13870 and ABZR86_RS13875 are separated by 91 nucleotidesABZR86_RS13875 and ABZR86_RS13880 are separated by 189 nucleotidesABZR86_RS13880 and ABZR86_RS13885 are separated by 11 nucleotides ABZR86_RS13870: ABZR86_RS13870 - DNA-processing protein DprA, at 3,091,956 to 3,093,086 _RS13870 ABZR86_RS13875: ABZR86_RS13875 - LysM domain-containing protein, at 3,093,178 to 3,094,302 _RS13875 ABZR86_RS13880: ABZR86_RS13880 - peptide deformylase, at 3,094,492 to 3,095,001 _RS13880 ABZR86_RS13885: ABZR86_RS13885 - methionyl-tRNA formyltransferase, at 3,095,013 to 3,095,939 _RS13885 Position (kb) 3093 3094 3095Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3092.309 kb on + strand, within ABZR86_RS13870at 3092.309 kb on + strand, within ABZR86_RS13870at 3092.309 kb on + strand, within ABZR86_RS13870at 3092.309 kb on + strand, within ABZR86_RS13870at 3092.309 kb on + strand, within ABZR86_RS13870at 3092.310 kb on - strand, within ABZR86_RS13870at 3092.310 kb on - strand, within ABZR86_RS13870at 3093.071 kb on + strandat 3093.071 kb on + strandat 3093.071 kb on + strandat 3093.071 kb on + strandat 3093.071 kb on + strandat 3093.072 kb on - strandat 3093.072 kb on - strandat 3093.072 kb on - strandat 3093.098 kb on + strandat 3093.098 kb on + strandat 3093.098 kb on + strandat 3093.098 kb on + strandat 3093.099 kb on - strandat 3093.099 kb on - strandat 3093.099 kb on - strandat 3093.180 kb on - strandat 3093.180 kb on - strandat 3093.180 kb on - strandat 3093.180 kb on - strandat 3093.242 kb on + strandat 3093.242 kb on + strandat 3093.242 kb on + strandat 3093.242 kb on + strandat 3093.242 kb on + strandat 3093.242 kb on + strandat 3093.242 kb on + strandat 3093.243 kb on - strandat 3093.243 kb on - strandat 3093.243 kb on - strandat 3093.243 kb on - strandat 3093.274 kb on + strandat 3093.274 kb on + strandat 3093.274 kb on + strandat 3093.274 kb on + strandat 3093.274 kb on + strandat 3093.274 kb on + strandat 3093.274 kb on + strandat 3093.274 kb on + strandat 3093.274 kb on + strandat 3093.274 kb on + strandat 3093.274 kb on + strandat 3093.275 kb on - strandat 3093.275 kb on - strandat 3093.275 kb on - strandat 3093.275 kb on - strandat 3093.275 kb on - strandat 3093.275 kb on - strandat 3093.275 kb on - strandat 3093.275 kb on - strandat 3093.275 kb on - strandat 3093.275 kb on - strandat 3093.275 kb on - strandat 3093.275 kb on - strandat 3093.383 kb on + strand, within ABZR86_RS13875at 3093.383 kb on + strand, within ABZR86_RS13875at 3093.384 kb on - strand, within ABZR86_RS13875at 3093.384 kb on - strand, within ABZR86_RS13875at 3093.384 kb on - strand, within ABZR86_RS13875at 3093.518 kb on + strand, within ABZR86_RS13875at 3093.518 kb on + strand, within ABZR86_RS13875at 3093.519 kb on - strand, within ABZR86_RS13875at 3093.519 kb on - strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.521 kb on + strand, within ABZR86_RS13875at 3093.522 kb on + strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.522 kb on - strand, within ABZR86_RS13875at 3093.524 kb on + strand, within ABZR86_RS13875at 3093.524 kb on + strand, within ABZR86_RS13875at 3093.524 kb on + strand, within ABZR86_RS13875at 3093.524 kb on + strand, within ABZR86_RS13875at 3093.525 kb on - strand, within ABZR86_RS13875at 3093.533 kb on + strand, within ABZR86_RS13875at 3093.533 kb on + strand, within ABZR86_RS13875at 3093.533 kb on + strand, within ABZR86_RS13875at 3093.534 kb on - strand, within ABZR86_RS13875at 3093.534 kb on - strand, within ABZR86_RS13875at 3093.656 kb on + strand, within ABZR86_RS13875at 3093.683 kb on + strand, within ABZR86_RS13875at 3093.683 kb on + strand, within ABZR86_RS13875at 3093.683 kb on + strand, within ABZR86_RS13875at 3093.683 kb on + strand, within ABZR86_RS13875at 3093.767 kb on + strand, within ABZR86_RS13875at 3093.866 kb on + strand, within ABZR86_RS13875at 3093.866 kb on + strand, within ABZR86_RS13875at 3093.866 kb on + strand, within ABZR86_RS13875at 3093.866 kb on + strand, within ABZR86_RS13875at 3093.866 kb on + strand, within ABZR86_RS13875at 3093.866 kb on + strand, within ABZR86_RS13875at 3093.866 kb on + strand, within ABZR86_RS13875at 3093.866 kb on + strand, within ABZR86_RS13875at 3093.866 kb on + strand, within ABZR86_RS13875at 3093.866 kb on + strand, within ABZR86_RS13875at 3093.866 kb on + strand, within ABZR86_RS13875at 3093.866 kb on + strand, within ABZR86_RS13875at 3093.867 kb on - strand, within ABZR86_RS13875at 3093.867 kb on - strand, within ABZR86_RS13875at 3093.867 kb on - strand, within ABZR86_RS13875at 3093.867 kb on - strand, within ABZR86_RS13875at 3093.867 kb on - strand, within ABZR86_RS13875at 3093.867 kb on - strand, within ABZR86_RS13875at 3093.867 kb on - strand, within ABZR86_RS13875at 3093.867 kb on - strand, within ABZR86_RS13875at 3093.867 kb on - strand, within ABZR86_RS13875at 3093.867 kb on - strand, within ABZR86_RS13875at 3093.867 kb on - strand, within ABZR86_RS13875at 3093.867 kb on - strand, within ABZR86_RS13875at 3093.920 kb on + strand, within ABZR86_RS13875at 3093.920 kb on + strand, within ABZR86_RS13875at 3093.920 kb on + strand, within ABZR86_RS13875at 3093.920 kb on + strand, within ABZR86_RS13875at 3093.920 kb on + strand, within ABZR86_RS13875at 3093.921 kb on - strand, within ABZR86_RS13875at 3093.921 kb on - strand, within ABZR86_RS13875at 3093.921 kb on - strand, within ABZR86_RS13875at 3093.921 kb on - strand, within ABZR86_RS13875at 3094.088 kb on + strand, within ABZR86_RS13875at 3094.088 kb on + strand, within ABZR86_RS13875at 3094.173 kb on + strand, within ABZR86_RS13875at 3094.174 kb on - strand, within ABZR86_RS13875at 3094.174 kb on - strand, within ABZR86_RS13875at 3094.205 kb on + strandat 3094.205 kb on + strandat 3094.205 kb on + strandat 3094.206 kb on - strandat 3094.247 kb on + strandat 3094.248 kb on - strandat 3094.248 kb on - strandat 3094.248 kb on - strandat 3094.296 kb on + strandat 3094.296 kb on + strandat 3094.296 kb on + strandat 3094.297 kb on - strandat 3094.297 kb on - strandat 3094.297 kb on - strandat 3094.302 kb on + strandat 3094.303 kb on - strandat 3094.342 kb on - strandat 3094.342 kb on - strandat 3094.342 kb on - strandat 3094.412 kb on + strandat 3094.412 kb on + strandat 3094.412 kb on + strandat 3094.412 kb on + strandat 3094.413 kb on - strandat 3094.413 kb on - strandat 3094.429 kb on + strandat 3094.429 kb on + strandat 3094.430 kb on - strandat 3094.509 kb on + strandat 3094.610 kb on - strand, within ABZR86_RS13880at 3094.928 kb on - strand, within ABZR86_RS13880at 3094.928 kb on - strand, within ABZR86_RS13880at 3094.928 kb on - strand, within ABZR86_RS13880at 3094.928 kb on - strand, within ABZR86_RS13880

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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3,092,309 + ABZR86_RS13870 0.31 +0.2
3,092,309 + ABZR86_RS13870 0.31 +0.2
3,092,309 + ABZR86_RS13870 0.31 +0.0
3,092,309 + ABZR86_RS13870 0.31 +0.0
3,092,309 + ABZR86_RS13870 0.31 +0.6
3,092,310 - ABZR86_RS13870 0.31 -0.3
3,092,310 - ABZR86_RS13870 0.31 +0.3
3,093,071 + +0.3
3,093,071 + +0.1
3,093,071 + -0.9
3,093,071 + +0.8
3,093,071 + -1.5
3,093,072 - +0.1
3,093,072 - +0.5
3,093,072 - +0.2
3,093,098 + -0.3
3,093,098 + -0.1
3,093,098 + +0.6
3,093,098 + +0.3
3,093,099 - +0.0
3,093,099 - -0.6
3,093,099 - -0.7
3,093,180 - -0.2
3,093,180 - -0.5
3,093,180 - +0.6
3,093,180 - -0.2
3,093,242 + +0.6
3,093,242 + +0.7
3,093,242 + -0.2
3,093,242 + +0.1
3,093,242 + -0.2
3,093,242 + +1.0
3,093,242 + +2.6
3,093,243 - +1.1
3,093,243 - -1.5
3,093,243 - -0.7
3,093,243 - +0.1
3,093,274 + +0.9
3,093,274 + -0.5
3,093,274 + +1.1
3,093,274 + +0.3
3,093,274 + +0.9
3,093,274 + -0.1
3,093,274 + -0.8
3,093,274 + +0.2
3,093,274 + +0.3
3,093,274 + -0.1
3,093,274 + +1.2
3,093,275 - +0.0
3,093,275 - -0.8
3,093,275 - +0.4
3,093,275 - -0.1
3,093,275 - -0.5
3,093,275 - -0.4
3,093,275 - +0.2
3,093,275 - +0.0
3,093,275 - +0.2
3,093,275 - +0.1
3,093,275 - +1.0
3,093,275 - -0.8
3,093,383 + ABZR86_RS13875 0.18 -0.1
3,093,383 + ABZR86_RS13875 0.18 -0.1
3,093,384 - ABZR86_RS13875 0.18 +1.4
3,093,384 - ABZR86_RS13875 0.18 +0.3
3,093,384 - ABZR86_RS13875 0.18 -0.1
3,093,518 + ABZR86_RS13875 0.30 -0.1
3,093,518 + ABZR86_RS13875 0.30 -0.1
3,093,519 - ABZR86_RS13875 0.30 -0.5
3,093,519 - ABZR86_RS13875 0.30 -0.1
3,093,521 + ABZR86_RS13875 0.30 +3.0
3,093,521 + ABZR86_RS13875 0.30 -0.8
3,093,521 + ABZR86_RS13875 0.30 -0.3
3,093,521 + ABZR86_RS13875 0.30 +0.1
3,093,521 + ABZR86_RS13875 0.30 +0.8
3,093,521 + ABZR86_RS13875 0.30 +0.1
3,093,521 + ABZR86_RS13875 0.30 -0.2
3,093,521 + ABZR86_RS13875 0.30 +0.4
3,093,521 + ABZR86_RS13875 0.30 +0.2
3,093,521 + ABZR86_RS13875 0.30 -0.3
3,093,521 + ABZR86_RS13875 0.30 +0.2
3,093,521 + ABZR86_RS13875 0.30 +0.1
3,093,521 + ABZR86_RS13875 0.30 +1.1
3,093,521 + ABZR86_RS13875 0.30 -0.6
3,093,521 + ABZR86_RS13875 0.30 -0.8
3,093,521 + ABZR86_RS13875 0.30 +0.8
3,093,521 + ABZR86_RS13875 0.30 -1.6
3,093,521 + ABZR86_RS13875 0.30 -0.5
3,093,521 + ABZR86_RS13875 0.30 -0.2
3,093,521 + ABZR86_RS13875 0.30 -0.2
3,093,522 + ABZR86_RS13875 0.31 -0.1
3,093,522 - ABZR86_RS13875 0.31 +0.5
3,093,522 - ABZR86_RS13875 0.31 -0.3
3,093,522 - ABZR86_RS13875 0.31 +1.2
3,093,522 - ABZR86_RS13875 0.31 +1.4
3,093,522 - ABZR86_RS13875 0.31 -0.5
3,093,522 - ABZR86_RS13875 0.31 +1.8
3,093,522 - ABZR86_RS13875 0.31 +0.6
3,093,522 - ABZR86_RS13875 0.31 -1.2
3,093,522 - ABZR86_RS13875 0.31 +0.0
3,093,522 - ABZR86_RS13875 0.31 +1.3
3,093,522 - ABZR86_RS13875 0.31 +0.9
3,093,522 - ABZR86_RS13875 0.31 -0.1
3,093,522 - ABZR86_RS13875 0.31 +0.3
3,093,522 - ABZR86_RS13875 0.31 +0.7
3,093,522 - ABZR86_RS13875 0.31 -0.2
3,093,522 - ABZR86_RS13875 0.31 +0.2
3,093,524 + ABZR86_RS13875 0.31 -0.4
3,093,524 + ABZR86_RS13875 0.31 -0.1
3,093,524 + ABZR86_RS13875 0.31 -0.2
3,093,524 + ABZR86_RS13875 0.31 +1.1
3,093,525 - ABZR86_RS13875 0.31 -0.2
3,093,533 + ABZR86_RS13875 0.32 +0.7
3,093,533 + ABZR86_RS13875 0.32 +1.1
3,093,533 + ABZR86_RS13875 0.32 +0.7
3,093,534 - ABZR86_RS13875 0.32 -0.8
3,093,534 - ABZR86_RS13875 0.32 -0.1
3,093,656 + ABZR86_RS13875 0.42 -0.6
3,093,683 + ABZR86_RS13875 0.45 +0.2
3,093,683 + ABZR86_RS13875 0.45 +0.7
3,093,683 + ABZR86_RS13875 0.45 +0.1
3,093,683 + ABZR86_RS13875 0.45 +0.7
3,093,767 + ABZR86_RS13875 0.52 +0.7
3,093,866 + ABZR86_RS13875 0.61 +1.1
3,093,866 + ABZR86_RS13875 0.61 -0.5
3,093,866 + ABZR86_RS13875 0.61 +0.3
3,093,866 + ABZR86_RS13875 0.61 +0.3
3,093,866 + ABZR86_RS13875 0.61 +0.3
3,093,866 + ABZR86_RS13875 0.61 +0.3
3,093,866 + ABZR86_RS13875 0.61 -0.2
3,093,866 + ABZR86_RS13875 0.61 +0.6
3,093,866 + ABZR86_RS13875 0.61 -0.2
3,093,866 + ABZR86_RS13875 0.61 +0.4
3,093,866 + ABZR86_RS13875 0.61 +0.5
3,093,866 + ABZR86_RS13875 0.61 -0.2
3,093,867 - ABZR86_RS13875 0.61 -0.1
3,093,867 - ABZR86_RS13875 0.61 -0.0
3,093,867 - ABZR86_RS13875 0.61 -0.2
3,093,867 - ABZR86_RS13875 0.61 -1.1
3,093,867 - ABZR86_RS13875 0.61 +0.3
3,093,867 - ABZR86_RS13875 0.61 -0.1
3,093,867 - ABZR86_RS13875 0.61 -0.3
3,093,867 - ABZR86_RS13875 0.61 +1.4
3,093,867 - ABZR86_RS13875 0.61 +0.3
3,093,867 - ABZR86_RS13875 0.61 +1.5
3,093,867 - ABZR86_RS13875 0.61 +0.4
3,093,867 - ABZR86_RS13875 0.61 -0.9
3,093,920 + ABZR86_RS13875 0.66 +0.8
3,093,920 + ABZR86_RS13875 0.66 -0.2
3,093,920 + ABZR86_RS13875 0.66 +1.0
3,093,920 + ABZR86_RS13875 0.66 -0.2
3,093,920 + ABZR86_RS13875 0.66 -1.6
3,093,921 - ABZR86_RS13875 0.66 +0.4
3,093,921 - ABZR86_RS13875 0.66 +1.0
3,093,921 - ABZR86_RS13875 0.66 +0.7
3,093,921 - ABZR86_RS13875 0.66 +0.2
3,094,088 + ABZR86_RS13875 0.81 +0.5
3,094,088 + ABZR86_RS13875 0.81 -1.1
3,094,173 + ABZR86_RS13875 0.88 +0.3
3,094,174 - ABZR86_RS13875 0.89 +0.0
3,094,174 - ABZR86_RS13875 0.89 +1.0
3,094,205 + -0.5
3,094,205 + -0.3
3,094,205 + +3.0
3,094,206 - -0.4
3,094,247 + +1.0
3,094,248 - -1.6
3,094,248 - +1.0
3,094,248 - -1.4
3,094,296 + +0.6
3,094,296 + +0.9
3,094,296 + +0.3
3,094,297 - -1.0
3,094,297 - -0.5
3,094,297 - -0.3
3,094,302 + -0.6
3,094,303 - +0.5
3,094,342 - -0.9
3,094,342 - -0.3
3,094,342 - +0.4
3,094,412 + +0.4
3,094,412 + -1.6
3,094,412 + -0.5
3,094,412 + -0.4
3,094,413 - -0.3
3,094,413 - -1.8
3,094,429 + -0.4
3,094,429 + +0.2
3,094,430 - +2.2
3,094,509 + +0.2
3,094,610 - ABZR86_RS13880 0.23 +1.4
3,094,928 - ABZR86_RS13880 0.85 +0.6
3,094,928 - ABZR86_RS13880 0.85 +1.7
3,094,928 - ABZR86_RS13880 0.85 -1.4
3,094,928 - ABZR86_RS13880 0.85 +0.5

Or see this region's nucleotide sequence