Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08325

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08320 and ABZR86_RS08325 are separated by 365 nucleotidesABZR86_RS08325 and ABZR86_RS08330 are separated by 2 nucleotides ABZR86_RS08320: ABZR86_RS08320 - M1 family metallopeptidase, at 1,852,752 to 1,855,406 _RS08320 ABZR86_RS08325: ABZR86_RS08325 - helix-turn-helix domain-containing protein, at 1,855,772 to 1,856,263 _RS08325 ABZR86_RS08330: ABZR86_RS08330 - PIN domain-containing protein, at 1,856,266 to 1,856,832 _RS08330 Position (kb) 1855 1856 1857Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1854.868 kb on + strand, within ABZR86_RS08320at 1854.869 kb on - strand, within ABZR86_RS08320at 1854.869 kb on - strand, within ABZR86_RS08320at 1854.928 kb on + strand, within ABZR86_RS08320at 1854.929 kb on - strand, within ABZR86_RS08320at 1855.009 kb on + strand, within ABZR86_RS08320at 1855.010 kb on - strand, within ABZR86_RS08320at 1855.010 kb on - strand, within ABZR86_RS08320at 1855.010 kb on - strand, within ABZR86_RS08320at 1855.025 kb on + strand, within ABZR86_RS08320at 1855.025 kb on + strand, within ABZR86_RS08320at 1855.025 kb on + strand, within ABZR86_RS08320at 1855.026 kb on - strand, within ABZR86_RS08320at 1855.026 kb on - strand, within ABZR86_RS08320at 1855.027 kb on + strand, within ABZR86_RS08320at 1855.027 kb on + strand, within ABZR86_RS08320at 1855.027 kb on + strand, within ABZR86_RS08320at 1855.027 kb on + strand, within ABZR86_RS08320at 1855.027 kb on + strand, within ABZR86_RS08320at 1855.027 kb on + strand, within ABZR86_RS08320at 1855.027 kb on + strand, within ABZR86_RS08320at 1855.027 kb on + strand, within ABZR86_RS08320at 1855.028 kb on - strand, within ABZR86_RS08320at 1855.028 kb on - strand, within ABZR86_RS08320at 1855.028 kb on - strand, within ABZR86_RS08320at 1855.028 kb on - strand, within ABZR86_RS08320at 1855.261 kb on + strandat 1855.262 kb on - strandat 1855.296 kb on - strandat 1855.468 kb on + strandat 1855.468 kb on + strandat 1855.469 kb on - strandat 1855.469 kb on - strandat 1855.469 kb on - strandat 1855.500 kb on + strandat 1855.501 kb on - strandat 1855.545 kb on + strandat 1855.606 kb on - strandat 1855.606 kb on - strandat 1855.778 kb on - strandat 1855.778 kb on - strandat 1855.778 kb on - strandat 1856.094 kb on - strand, within ABZR86_RS08325at 1856.134 kb on + strand, within ABZR86_RS08325at 1856.135 kb on - strand, within ABZR86_RS08325at 1856.159 kb on + strand, within ABZR86_RS08325at 1856.159 kb on + strand, within ABZR86_RS08325at 1856.160 kb on - strand, within ABZR86_RS08325at 1856.284 kb on + strandat 1856.284 kb on + strandat 1856.302 kb on + strandat 1856.302 kb on + strandat 1856.523 kb on - strand, within ABZR86_RS08330at 1856.630 kb on - strand, within ABZR86_RS08330at 1856.630 kb on - strand, within ABZR86_RS08330at 1856.766 kb on + strand, within ABZR86_RS08330at 1856.766 kb on + strand, within ABZR86_RS08330at 1856.767 kb on - strand, within ABZR86_RS08330at 1856.767 kb on - strand, within ABZR86_RS08330at 1856.828 kb on + strandat 1856.828 kb on + strandat 1856.829 kb on - strandat 1856.829 kb on - strandat 1856.829 kb on - strandat 1856.829 kb on - strandat 1856.829 kb on - strandat 1856.830 kb on + strandat 1856.830 kb on + strandat 1856.830 kb on + strandat 1856.830 kb on + strandat 1856.830 kb on + strandat 1856.830 kb on + strandat 1856.942 kb on + strandat 1856.942 kb on + strandat 1856.943 kb on - strandat 1856.943 kb on - strandat 1857.091 kb on + strandat 1857.091 kb on + strandat 1857.091 kb on + strandat 1857.092 kb on - strandat 1857.092 kb on - strandat 1857.092 kb on - strandat 1857.092 kb on - strandat 1857.092 kb on - strandat 1857.118 kb on - strandat 1857.165 kb on - strandat 1857.201 kb on + strandat 1857.201 kb on + strandat 1857.201 kb on + strandat 1857.201 kb on + strandat 1857.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,854,868 + ABZR86_RS08320 0.80 -0.3
1,854,869 - ABZR86_RS08320 0.80 -0.2
1,854,869 - ABZR86_RS08320 0.80 -0.4
1,854,928 + ABZR86_RS08320 0.82 +0.8
1,854,929 - ABZR86_RS08320 0.82 -0.8
1,855,009 + ABZR86_RS08320 0.85 +0.1
1,855,010 - ABZR86_RS08320 0.85 -0.2
1,855,010 - ABZR86_RS08320 0.85 +0.4
1,855,010 - ABZR86_RS08320 0.85 -1.6
1,855,025 + ABZR86_RS08320 0.86 -0.6
1,855,025 + ABZR86_RS08320 0.86 +1.3
1,855,025 + ABZR86_RS08320 0.86 -0.2
1,855,026 - ABZR86_RS08320 0.86 +0.1
1,855,026 - ABZR86_RS08320 0.86 -0.6
1,855,027 + ABZR86_RS08320 0.86 -0.9
1,855,027 + ABZR86_RS08320 0.86 +0.1
1,855,027 + ABZR86_RS08320 0.86 -0.2
1,855,027 + ABZR86_RS08320 0.86 -0.2
1,855,027 + ABZR86_RS08320 0.86 +0.4
1,855,027 + ABZR86_RS08320 0.86 -0.1
1,855,027 + ABZR86_RS08320 0.86 -0.9
1,855,027 + ABZR86_RS08320 0.86 -0.2
1,855,028 - ABZR86_RS08320 0.86 -0.1
1,855,028 - ABZR86_RS08320 0.86 +2.7
1,855,028 - ABZR86_RS08320 0.86 +0.6
1,855,028 - ABZR86_RS08320 0.86 -1.2
1,855,261 + -0.3
1,855,262 - -0.2
1,855,296 - -0.3
1,855,468 + -0.1
1,855,468 + -0.6
1,855,469 - +0.1
1,855,469 - -0.1
1,855,469 - -0.6
1,855,500 + +0.6
1,855,501 - +0.3
1,855,545 + +0.5
1,855,606 - +0.2
1,855,606 - -0.2
1,855,778 - -0.1
1,855,778 - +0.6
1,855,778 - -0.3
1,856,094 - ABZR86_RS08325 0.65 +0.7
1,856,134 + ABZR86_RS08325 0.74 -3.6
1,856,135 - ABZR86_RS08325 0.74 +0.4
1,856,159 + ABZR86_RS08325 0.79 -2.6
1,856,159 + ABZR86_RS08325 0.79 -2.5
1,856,160 - ABZR86_RS08325 0.79 +0.2
1,856,284 + +0.5
1,856,284 + -0.5
1,856,302 + -0.0
1,856,302 + -0.0
1,856,523 - ABZR86_RS08330 0.45 -0.4
1,856,630 - ABZR86_RS08330 0.64 +0.3
1,856,630 - ABZR86_RS08330 0.64 -0.2
1,856,766 + ABZR86_RS08330 0.88 -0.1
1,856,766 + ABZR86_RS08330 0.88 +0.1
1,856,767 - ABZR86_RS08330 0.88 -2.0
1,856,767 - ABZR86_RS08330 0.88 -0.1
1,856,828 + -0.2
1,856,828 + +0.2
1,856,829 - -0.4
1,856,829 - +0.4
1,856,829 - -0.0
1,856,829 - -0.2
1,856,829 - -0.3
1,856,830 + +0.0
1,856,830 + +0.4
1,856,830 + -0.1
1,856,830 + +0.8
1,856,830 + -0.4
1,856,830 + +0.2
1,856,942 + +1.1
1,856,942 + -0.1
1,856,943 - +0.4
1,856,943 - -0.3
1,857,091 + -1.1
1,857,091 + -0.4
1,857,091 + +0.1
1,857,092 - +0.3
1,857,092 - +0.3
1,857,092 - +0.3
1,857,092 - -1.0
1,857,092 - -0.4
1,857,118 - -0.2
1,857,165 - -0.1
1,857,201 + +0.4
1,857,201 + +0.1
1,857,201 + +0.2
1,857,201 + -1.0
1,857,202 - +1.0

Or see this region's nucleotide sequence