Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS07385 and ABZR86_RS07390 are separated by 510 nucleotides ABZR86_RS07390 and ABZR86_RS07395 are separated by 255 nucleotides
ABZR86_RS07385: ABZR86_RS07385 - autotransporter-associated beta strand repeat-containing protein, at 1,622,297 to 1,628,095
_RS07385
ABZR86_RS07390: ABZR86_RS07390 - RidA family protein, at 1,628,606 to 1,629,079
_RS07390
ABZR86_RS07395: ABZR86_RS07395 - TonB-dependent siderophore receptor, at 1,629,335 to 1,631,563
_RS07395
Position (kb)
1628
1629
1630 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1628.083 kb on - strand at 1628.111 kb on + strand at 1628.112 kb on - strand at 1628.112 kb on - strand at 1628.112 kb on - strand at 1628.198 kb on + strand at 1628.198 kb on + strand at 1628.198 kb on + strand at 1628.199 kb on - strand at 1628.199 kb on - strand at 1628.199 kb on - strand at 1628.275 kb on + strand at 1628.449 kb on + strand at 1628.449 kb on + strand at 1628.464 kb on + strand at 1628.464 kb on + strand at 1628.568 kb on + strand at 1628.569 kb on - strand at 1628.569 kb on - strand at 1628.569 kb on - strand at 1628.732 kb on + strand, within ABZR86_RS07390 at 1628.732 kb on + strand, within ABZR86_RS07390 at 1628.733 kb on - strand, within ABZR86_RS07390 at 1628.774 kb on + strand, within ABZR86_RS07390 at 1628.774 kb on + strand, within ABZR86_RS07390 at 1628.774 kb on + strand, within ABZR86_RS07390 at 1628.774 kb on + strand, within ABZR86_RS07390 at 1628.774 kb on + strand, within ABZR86_RS07390 at 1628.924 kb on + strand, within ABZR86_RS07390 at 1628.924 kb on + strand, within ABZR86_RS07390 at 1628.924 kb on + strand, within ABZR86_RS07390 at 1628.924 kb on + strand, within ABZR86_RS07390 at 1628.924 kb on + strand, within ABZR86_RS07390 at 1628.924 kb on + strand, within ABZR86_RS07390 at 1628.925 kb on - strand, within ABZR86_RS07390 at 1628.925 kb on - strand, within ABZR86_RS07390 at 1628.925 kb on - strand, within ABZR86_RS07390 at 1628.975 kb on + strand, within ABZR86_RS07390 at 1628.975 kb on + strand, within ABZR86_RS07390 at 1628.975 kb on + strand, within ABZR86_RS07390 at 1628.975 kb on + strand, within ABZR86_RS07390 at 1628.975 kb on + strand, within ABZR86_RS07390 at 1628.975 kb on + strand, within ABZR86_RS07390 at 1628.975 kb on + strand, within ABZR86_RS07390 at 1628.976 kb on - strand, within ABZR86_RS07390 at 1628.976 kb on - strand, within ABZR86_RS07390 at 1629.013 kb on - strand, within ABZR86_RS07390 at 1629.077 kb on + strand at 1629.114 kb on + strand at 1629.229 kb on + strand at 1629.253 kb on + strand at 1629.254 kb on - strand at 1629.301 kb on + strand at 1629.302 kb on - strand at 1629.574 kb on + strand, within ABZR86_RS07395 at 1629.575 kb on - strand, within ABZR86_RS07395 at 1629.581 kb on + strand, within ABZR86_RS07395 at 1629.758 kb on + strand, within ABZR86_RS07395 at 1629.758 kb on + strand, within ABZR86_RS07395 at 1629.758 kb on + strand, within ABZR86_RS07395 at 1629.759 kb on - strand, within ABZR86_RS07395 at 1629.759 kb on - strand, within ABZR86_RS07395 at 1629.759 kb on - strand, within ABZR86_RS07395 at 1629.761 kb on + strand, within ABZR86_RS07395 at 1629.860 kb on + strand, within ABZR86_RS07395 at 1629.861 kb on - strand, within ABZR86_RS07395 at 1629.861 kb on - strand, within ABZR86_RS07395 at 1629.861 kb on - strand, within ABZR86_RS07395 at 1629.869 kb on - strand, within ABZR86_RS07395
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 1,628,083 - +1.0 1,628,111 + +0.6 1,628,112 - -0.3 1,628,112 - -0.4 1,628,112 - -3.7 1,628,198 + -0.6 1,628,198 + +0.4 1,628,198 + -0.3 1,628,199 - +0.9 1,628,199 - -1.3 1,628,199 - +2.1 1,628,275 + -0.0 1,628,449 + -0.6 1,628,449 + +0.1 1,628,464 + -0.3 1,628,464 + +0.4 1,628,568 + -0.1 1,628,569 - -0.1 1,628,569 - -2.8 1,628,569 - +0.3 1,628,732 + ABZR86_RS07390 0.27 +0.6 1,628,732 + ABZR86_RS07390 0.27 +0.0 1,628,733 - ABZR86_RS07390 0.27 +0.6 1,628,774 + ABZR86_RS07390 0.35 -1.1 1,628,774 + ABZR86_RS07390 0.35 -2.3 1,628,774 + ABZR86_RS07390 0.35 -0.3 1,628,774 + ABZR86_RS07390 0.35 -1.0 1,628,774 + ABZR86_RS07390 0.35 -0.3 1,628,924 + ABZR86_RS07390 0.67 +0.4 1,628,924 + ABZR86_RS07390 0.67 -1.3 1,628,924 + ABZR86_RS07390 0.67 -2.0 1,628,924 + ABZR86_RS07390 0.67 +1.2 1,628,924 + ABZR86_RS07390 0.67 -0.2 1,628,924 + ABZR86_RS07390 0.67 -0.7 1,628,925 - ABZR86_RS07390 0.67 +0.7 1,628,925 - ABZR86_RS07390 0.67 -0.3 1,628,925 - ABZR86_RS07390 0.67 +1.0 1,628,975 + ABZR86_RS07390 0.78 -0.1 1,628,975 + ABZR86_RS07390 0.78 -0.7 1,628,975 + ABZR86_RS07390 0.78 +0.1 1,628,975 + ABZR86_RS07390 0.78 -0.3 1,628,975 + ABZR86_RS07390 0.78 +0.1 1,628,975 + ABZR86_RS07390 0.78 +0.7 1,628,975 + ABZR86_RS07390 0.78 -0.0 1,628,976 - ABZR86_RS07390 0.78 -0.5 1,628,976 - ABZR86_RS07390 0.78 -0.6 1,629,013 - ABZR86_RS07390 0.86 +0.4 1,629,077 + -0.4 1,629,114 + +0.4 1,629,229 + -0.1 1,629,253 + -0.0 1,629,254 - +1.4 1,629,301 + -1.3 1,629,302 - +0.7 1,629,574 + ABZR86_RS07395 0.11 -0.1 1,629,575 - ABZR86_RS07395 0.11 +0.5 1,629,581 + ABZR86_RS07395 0.11 +0.3 1,629,758 + ABZR86_RS07395 0.19 +0.1 1,629,758 + ABZR86_RS07395 0.19 -0.0 1,629,758 + ABZR86_RS07395 0.19 +0.8 1,629,759 - ABZR86_RS07395 0.19 +0.9 1,629,759 - ABZR86_RS07395 0.19 -0.5 1,629,759 - ABZR86_RS07395 0.19 +0.2 1,629,761 + ABZR86_RS07395 0.19 -0.0 1,629,860 + ABZR86_RS07395 0.24 -0.2 1,629,861 - ABZR86_RS07395 0.24 -0.2 1,629,861 - ABZR86_RS07395 0.24 -0.1 1,629,861 - ABZR86_RS07395 0.24 -0.6 1,629,869 - ABZR86_RS07395 0.24 -0.2
Or see this region's nucleotide sequence