Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS05585 and ABZR86_RS05590 are separated by 76 nucleotides ABZR86_RS05590 and ABZR86_RS05595 are separated by 274 nucleotides ABZR86_RS05595 and ABZR86_RS05600 overlap by 4 nucleotides ABZR86_RS05600 and ABZR86_RS05605 are separated by 1 nucleotides
ABZR86_RS05585: ABZR86_RS05585 - LysR substrate-binding domain-containing protein, at 1,262,751 to 1,263,665
_RS05585
ABZR86_RS05590: ABZR86_RS05590 - type B 50S ribosomal protein L36, at 1,263,742 to 1,263,867
_RS05590
ABZR86_RS05595: ABZR86_RS05595 - transcription elongation factor GreA, at 1,264,142 to 1,264,618
_RS05595
ABZR86_RS05600: ABZR86_RS05600 - carbamoyl-phosphate synthase large subunit, at 1,264,615 to 1,267,842
_RS05600
ABZR86_RS05605: ABZR86_RS05605 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 1,267,844 to 1,268,971
_RS05605
Position (kb)
1264
1265
1266
1267
1268 Strain fitness (log2 ratio)
-2
-1
0
1 at 1263.622 kb on + strand at 1263.623 kb on - strand at 1263.671 kb on + strand at 1263.671 kb on + strand at 1263.671 kb on + strand at 1263.671 kb on + strand at 1263.672 kb on - strand at 1263.672 kb on - strand at 1263.888 kb on + strand at 1263.889 kb on - strand at 1263.889 kb on - strand at 1263.889 kb on - strand at 1263.889 kb on - strand at 1263.889 kb on - strand at 1263.918 kb on - strand at 1263.933 kb on + strand at 1263.996 kb on + strand at 1264.012 kb on - strand at 1264.149 kb on + strand at 1264.149 kb on + strand at 1264.149 kb on + strand at 1264.149 kb on + strand at 1264.150 kb on - strand at 1264.150 kb on - strand at 1264.150 kb on - strand at 1264.150 kb on - strand at 1264.150 kb on - strand at 1264.150 kb on - strand at 1264.150 kb on - strand at 1264.150 kb on - strand at 1264.170 kb on + strand at 1264.170 kb on + strand at 1264.170 kb on + strand at 1264.170 kb on + strand at 1264.170 kb on + strand at 1264.170 kb on + strand at 1264.170 kb on + strand at 1264.171 kb on - strand at 1264.171 kb on - strand at 1264.171 kb on - strand at 1264.305 kb on + strand, within ABZR86_RS05595 at 1264.305 kb on + strand, within ABZR86_RS05595 at 1264.305 kb on + strand, within ABZR86_RS05595 at 1264.306 kb on - strand, within ABZR86_RS05595 at 1264.306 kb on - strand, within ABZR86_RS05595 at 1264.306 kb on - strand, within ABZR86_RS05595 at 1264.306 kb on - strand, within ABZR86_RS05595 at 1264.477 kb on - strand, within ABZR86_RS05595 at 1268.499 kb on - strand, within ABZR86_RS05605
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 1,263,622 + +0.2 1,263,623 - +0.6 1,263,671 + -0.5 1,263,671 + -0.3 1,263,671 + +0.3 1,263,671 + -0.8 1,263,672 - -0.4 1,263,672 - -0.5 1,263,888 + -1.5 1,263,889 - +0.2 1,263,889 - +0.4 1,263,889 - -0.1 1,263,889 - +0.3 1,263,889 - +1.3 1,263,918 - +0.1 1,263,933 + -0.2 1,263,996 + -0.3 1,264,012 - -0.1 1,264,149 + +0.2 1,264,149 + -0.7 1,264,149 + -1.6 1,264,149 + -0.3 1,264,150 - +1.0 1,264,150 - +0.5 1,264,150 - -0.1 1,264,150 - +0.3 1,264,150 - -0.7 1,264,150 - +0.2 1,264,150 - -2.6 1,264,150 - -0.4 1,264,170 + -0.8 1,264,170 + -0.4 1,264,170 + -0.8 1,264,170 + -0.4 1,264,170 + -0.5 1,264,170 + -0.7 1,264,170 + -0.5 1,264,171 - -1.1 1,264,171 - +0.4 1,264,171 - -1.0 1,264,305 + ABZR86_RS05595 0.34 +0.3 1,264,305 + ABZR86_RS05595 0.34 -0.0 1,264,305 + ABZR86_RS05595 0.34 -0.6 1,264,306 - ABZR86_RS05595 0.34 +0.0 1,264,306 - ABZR86_RS05595 0.34 -1.3 1,264,306 - ABZR86_RS05595 0.34 +0.0 1,264,306 - ABZR86_RS05595 0.34 -1.5 1,264,477 - ABZR86_RS05595 0.70 -0.1 1,268,499 - ABZR86_RS05605 0.58 -1.6
Or see this region's nucleotide sequence