Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02950 and ABZR86_RS02955 are separated by 251 nucleotides ABZR86_RS02955 and ABZR86_RS02960 are separated by 25 nucleotides ABZR86_RS02960 and ABZR86_RS02965 are separated by 164 nucleotides ABZR86_RS02965 and ABZR86_RS02970 are separated by 214 nucleotides
ABZR86_RS02950: ABZR86_RS02950 - sigma-54 dependent transcriptional regulator, at 603,621 to 604,970
_RS02950
ABZR86_RS02955: ABZR86_RS02955 - hypothetical protein, at 605,222 to 605,605
_RS02955
ABZR86_RS02960: ABZR86_RS02960 - BON domain-containing protein, at 605,631 to 606,185
_RS02960
ABZR86_RS02965: ABZR86_RS02965 - hypothetical protein, at 606,350 to 606,541
_RS02965
ABZR86_RS02970: ABZR86_RS02970 - PAS domain-containing sensor histidine kinase, at 606,756 to 608,690
_RS02970
Position (kb) 605
606
607 Strain fitness (log2 ratio) -2
-1
0
1 at 604.691 kb on + strand, within ABZR86_RS02950 at 604.802 kb on + strand, within ABZR86_RS02950 at 604.822 kb on + strand, within ABZR86_RS02950 at 604.822 kb on + strand, within ABZR86_RS02950 at 605.049 kb on + strand at 605.050 kb on - strand at 605.050 kb on - strand at 605.115 kb on + strand at 605.174 kb on + strand at 605.178 kb on + strand at 605.179 kb on - strand at 605.179 kb on - strand at 605.179 kb on - strand at 605.422 kb on + strand, within ABZR86_RS02955 at 605.423 kb on - strand, within ABZR86_RS02955 at 605.453 kb on + strand, within ABZR86_RS02955 at 605.626 kb on + strand at 605.659 kb on - strand at 606.089 kb on - strand, within ABZR86_RS02960 at 606.089 kb on - strand, within ABZR86_RS02960 at 606.222 kb on + strand at 606.223 kb on - strand at 606.223 kb on - strand at 606.546 kb on + strand at 606.547 kb on - strand at 606.547 kb on - strand at 606.602 kb on + strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.779 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 604,691 + ABZR86_RS02950 0.79 +0.6 604,802 + ABZR86_RS02950 0.87 +0.5 604,822 + ABZR86_RS02950 0.89 +0.1 604,822 + ABZR86_RS02950 0.89 +0.9 605,049 + +0.6 605,050 - -0.7 605,050 - -0.2 605,115 + -0.5 605,174 + -0.3 605,178 + -1.8 605,179 - -0.0 605,179 - +1.1 605,179 - +1.3 605,422 + ABZR86_RS02955 0.52 +0.4 605,423 - ABZR86_RS02955 0.52 +0.0 605,453 + ABZR86_RS02955 0.60 +0.1 605,626 + -0.1 605,659 - +0.9 606,089 - ABZR86_RS02960 0.83 -0.8 606,089 - ABZR86_RS02960 0.83 -0.1 606,222 + +1.2 606,223 - +0.4 606,223 - -0.5 606,546 + -0.2 606,547 - -0.9 606,547 - -0.3 606,602 + +0.2 606,777 - +1.5 606,777 - -0.2 606,777 - -1.1 606,779 - -0.1
Or see this region's nucleotide sequence