Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01205

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01200 and ABZR86_RS01205 are separated by 61 nucleotidesABZR86_RS01205 and ABZR86_RS01210 overlap by 4 nucleotidesABZR86_RS01210 and ABZR86_RS01215 are separated by 2 nucleotides ABZR86_RS01200: ABZR86_RS01200 - sugar porter family MFS transporter, at 248,788 to 250,179 _RS01200 ABZR86_RS01205: ABZR86_RS01205 - D-galactanolactonase (from data), at 250,241 to 251,143 _RS01205 ABZR86_RS01210: ABZR86_RS01210 - SDR family oxidoreductase, at 251,140 to 251,904 _RS01210 ABZR86_RS01215: ABZR86_RS01215 - galactonate dehydratase, at 251,907 to 253,055 _RS01215 Position (kb) 250 251 252Strain fitness (log2 ratio) -2 -1 0 1at 249.357 kb on - strand, within ABZR86_RS01200at 249.359 kb on + strand, within ABZR86_RS01200at 249.360 kb on - strand, within ABZR86_RS01200at 249.360 kb on - strand, within ABZR86_RS01200at 249.677 kb on + strand, within ABZR86_RS01200at 249.678 kb on - strand, within ABZR86_RS01200at 249.738 kb on - strand, within ABZR86_RS01200at 249.738 kb on - strand, within ABZR86_RS01200at 249.738 kb on - strand, within ABZR86_RS01200at 249.763 kb on - strand, within ABZR86_RS01200at 249.789 kb on - strand, within ABZR86_RS01200at 249.789 kb on - strand, within ABZR86_RS01200at 250.122 kb on + strandat 250.122 kb on + strandat 250.122 kb on + strandat 250.124 kb on + strandat 250.124 kb on + strandat 250.124 kb on + strandat 250.124 kb on + strandat 250.125 kb on - strandat 250.125 kb on - strandat 250.125 kb on - strandat 250.389 kb on + strand, within ABZR86_RS01205at 250.389 kb on + strand, within ABZR86_RS01205at 250.389 kb on + strand, within ABZR86_RS01205at 250.389 kb on + strand, within ABZR86_RS01205at 250.389 kb on + strand, within ABZR86_RS01205at 250.389 kb on + strand, within ABZR86_RS01205at 250.390 kb on - strand, within ABZR86_RS01205at 250.390 kb on - strand, within ABZR86_RS01205at 250.390 kb on - strand, within ABZR86_RS01205at 250.430 kb on - strand, within ABZR86_RS01205at 250.430 kb on - strand, within ABZR86_RS01205at 250.656 kb on + strand, within ABZR86_RS01205at 250.656 kb on + strand, within ABZR86_RS01205at 250.656 kb on + strand, within ABZR86_RS01205at 250.657 kb on - strand, within ABZR86_RS01205at 250.718 kb on - strand, within ABZR86_RS01205at 251.064 kb on + strandat 251.065 kb on - strandat 251.065 kb on - strandat 251.110 kb on + strandat 251.111 kb on - strandat 251.144 kb on - strandat 251.144 kb on - strandat 251.423 kb on + strand, within ABZR86_RS01210at 251.424 kb on - strand, within ABZR86_RS01210at 251.424 kb on - strand, within ABZR86_RS01210at 251.424 kb on - strand, within ABZR86_RS01210at 251.583 kb on + strand, within ABZR86_RS01210at 251.596 kb on - strand, within ABZR86_RS01210at 251.889 kb on + strandat 251.890 kb on - strandat 251.990 kb on - strandat 251.990 kb on - strandat 252.041 kb on - strand, within ABZR86_RS01215at 252.041 kb on - strand, within ABZR86_RS01215at 252.052 kb on + strand, within ABZR86_RS01215at 252.106 kb on + strand, within ABZR86_RS01215at 252.107 kb on - strand, within ABZR86_RS01215

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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249,357 - ABZR86_RS01200 0.41 -1.2
249,359 + ABZR86_RS01200 0.41 +0.7
249,360 - ABZR86_RS01200 0.41 -0.5
249,360 - ABZR86_RS01200 0.41 +0.2
249,677 + ABZR86_RS01200 0.64 +0.4
249,678 - ABZR86_RS01200 0.64 +0.1
249,738 - ABZR86_RS01200 0.68 +0.2
249,738 - ABZR86_RS01200 0.68 -0.0
249,738 - ABZR86_RS01200 0.68 +0.4
249,763 - ABZR86_RS01200 0.70 +1.6
249,789 - ABZR86_RS01200 0.72 -0.3
249,789 - ABZR86_RS01200 0.72 +0.4
250,122 + -2.0
250,122 + -0.3
250,122 + +1.6
250,124 + -0.0
250,124 + -0.1
250,124 + +0.2
250,124 + -0.4
250,125 - +0.2
250,125 - -0.8
250,125 - -0.7
250,389 + ABZR86_RS01205 0.16 -0.4
250,389 + ABZR86_RS01205 0.16 -0.2
250,389 + ABZR86_RS01205 0.16 -1.0
250,389 + ABZR86_RS01205 0.16 +1.0
250,389 + ABZR86_RS01205 0.16 -0.5
250,389 + ABZR86_RS01205 0.16 +0.1
250,390 - ABZR86_RS01205 0.17 -0.2
250,390 - ABZR86_RS01205 0.17 +1.1
250,390 - ABZR86_RS01205 0.17 -0.8
250,430 - ABZR86_RS01205 0.21 -0.8
250,430 - ABZR86_RS01205 0.21 -0.4
250,656 + ABZR86_RS01205 0.46 -0.0
250,656 + ABZR86_RS01205 0.46 +0.6
250,656 + ABZR86_RS01205 0.46 +0.4
250,657 - ABZR86_RS01205 0.46 -0.2
250,718 - ABZR86_RS01205 0.53 +0.2
251,064 + +1.1
251,065 - -0.4
251,065 - +1.2
251,110 + +0.1
251,111 - +0.4
251,144 - +0.4
251,144 - +1.1
251,423 + ABZR86_RS01210 0.37 +0.6
251,424 - ABZR86_RS01210 0.37 +0.3
251,424 - ABZR86_RS01210 0.37 +0.3
251,424 - ABZR86_RS01210 0.37 +0.8
251,583 + ABZR86_RS01210 0.58 +0.3
251,596 - ABZR86_RS01210 0.60 +0.0
251,889 + +0.0
251,890 - +0.0
251,990 - -0.0
251,990 - +0.8
252,041 - ABZR86_RS01215 0.12 +0.5
252,041 - ABZR86_RS01215 0.12 +0.5
252,052 + ABZR86_RS01215 0.13 +0.4
252,106 + ABZR86_RS01215 0.17 +0.5
252,107 - ABZR86_RS01215 0.17 +0.6

Or see this region's nucleotide sequence