Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01040 and ABZR86_RS01045 are separated by 112 nucleotides ABZR86_RS01045 and ABZR86_RS01050 are separated by 70 nucleotides ABZR86_RS01050 and ABZR86_RS01055 are separated by 2 nucleotides
ABZR86_RS01040: ABZR86_RS01040 - histidine kinase dimerization/phospho-acceptor domain-containing protein, at 204,457 to 206,286
_RS01040
ABZR86_RS01045: ABZR86_RS01045 - response regulator transcription factor, at 206,399 to 207,037
_RS01045
ABZR86_RS01050: ABZR86_RS01050 - response regulator transcription factor, at 207,108 to 207,737
_RS01050
ABZR86_RS01055: ABZR86_RS01055 - CHASE2 domain-containing protein, at 207,740 to 208,891
_RS01055
Position (kb) 207
208 Strain fitness (log2 ratio) -2
-1
0
1 at 206.157 kb on + strand at 206.157 kb on + strand at 206.157 kb on + strand at 206.158 kb on - strand at 206.158 kb on - strand at 206.158 kb on - strand at 206.158 kb on - strand at 206.158 kb on - strand at 206.161 kb on + strand at 206.161 kb on + strand at 206.161 kb on + strand at 206.161 kb on + strand at 206.162 kb on - strand at 206.162 kb on - strand at 206.162 kb on - strand at 206.196 kb on + strand at 206.196 kb on + strand at 206.196 kb on + strand at 206.217 kb on + strand at 206.218 kb on - strand at 206.218 kb on - strand at 206.226 kb on + strand at 206.226 kb on + strand at 206.227 kb on - strand at 206.227 kb on - strand at 206.227 kb on - strand at 206.227 kb on - strand at 206.235 kb on + strand at 206.276 kb on + strand at 206.276 kb on + strand at 206.277 kb on - strand at 206.277 kb on - strand at 206.277 kb on - strand at 206.362 kb on - strand at 206.579 kb on + strand, within ABZR86_RS01045 at 206.579 kb on + strand, within ABZR86_RS01045 at 206.579 kb on + strand, within ABZR86_RS01045 at 206.580 kb on - strand, within ABZR86_RS01045 at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.014 kb on + strand at 207.015 kb on - strand at 207.091 kb on + strand at 207.092 kb on - strand at 207.092 kb on - strand at 207.097 kb on + strand at 207.098 kb on - strand at 207.098 kb on - strand at 207.098 kb on - strand at 207.113 kb on + strand at 207.114 kb on - strand at 207.477 kb on + strand, within ABZR86_RS01050 at 207.477 kb on + strand, within ABZR86_RS01050 at 207.477 kb on + strand, within ABZR86_RS01050 at 207.478 kb on - strand, within ABZR86_RS01050 at 207.478 kb on - strand, within ABZR86_RS01050 at 207.924 kb on + strand, within ABZR86_RS01055 at 207.924 kb on + strand, within ABZR86_RS01055 at 207.925 kb on - strand, within ABZR86_RS01055 at 207.925 kb on - strand, within ABZR86_RS01055 at 208.176 kb on + strand, within ABZR86_RS01055 at 208.176 kb on + strand, within ABZR86_RS01055 at 208.176 kb on + strand, within ABZR86_RS01055 at 208.176 kb on + strand, within ABZR86_RS01055 at 208.177 kb on - strand, within ABZR86_RS01055 at 208.177 kb on - strand, within ABZR86_RS01055 at 208.227 kb on + strand, within ABZR86_RS01055 at 208.227 kb on + strand, within ABZR86_RS01055 at 208.228 kb on - strand, within ABZR86_RS01055 at 208.228 kb on - strand, within ABZR86_RS01055 at 208.228 kb on - strand, within ABZR86_RS01055 at 208.228 kb on - strand, within ABZR86_RS01055 at 208.228 kb on - strand, within ABZR86_RS01055 at 208.248 kb on + strand, within ABZR86_RS01055 at 208.248 kb on + strand, within ABZR86_RS01055 at 208.604 kb on - strand, within ABZR86_RS01055
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 206,157 + -0.2 206,157 + +0.2 206,157 + +1.0 206,158 - -0.7 206,158 - -0.1 206,158 - +0.5 206,158 - -2.2 206,158 - +0.3 206,161 + -0.2 206,161 + -0.3 206,161 + -0.3 206,161 + -0.4 206,162 - -0.3 206,162 - +1.7 206,162 - +0.4 206,196 + +1.1 206,196 + +1.5 206,196 + +0.5 206,217 + +0.3 206,218 - -0.0 206,218 - +0.8 206,226 + -0.9 206,226 + +0.3 206,227 - -0.8 206,227 - -0.4 206,227 - -0.6 206,227 - +0.2 206,235 + -0.0 206,276 + +0.3 206,276 + +0.0 206,277 - -0.1 206,277 - +0.0 206,277 - +0.4 206,362 - +0.3 206,579 + ABZR86_RS01045 0.28 -0.5 206,579 + ABZR86_RS01045 0.28 -0.9 206,579 + ABZR86_RS01045 0.28 -0.3 206,580 - ABZR86_RS01045 0.28 +0.5 207,008 + -0.7 207,008 + +1.3 207,008 + +0.5 207,008 + -0.6 207,008 + +0.2 207,008 + +1.1 207,008 + -0.7 207,008 + -0.8 207,008 + -0.1 207,008 + +0.5 207,008 + +0.3 207,008 + -0.7 207,008 + +0.4 207,008 + +0.2 207,008 + -0.7 207,008 + +0.8 207,009 - -0.8 207,009 - +0.3 207,009 - +0.4 207,009 - -1.4 207,009 - -0.5 207,009 - +0.4 207,009 - +0.6 207,009 - -0.3 207,009 - +0.3 207,009 - +0.6 207,009 - +0.1 207,009 - -0.1 207,009 - +0.6 207,009 - -2.2 207,009 - -0.1 207,009 - +1.1 207,009 - +0.6 207,009 - +0.6 207,009 - +1.1 207,009 - +1.0 207,009 - -0.2 207,014 + -0.6 207,015 - -1.8 207,091 + -1.3 207,092 - -0.4 207,092 - -0.2 207,097 + -0.8 207,098 - -1.0 207,098 - +1.1 207,098 - -0.2 207,113 + +0.1 207,114 - -0.2 207,477 + ABZR86_RS01050 0.59 -0.3 207,477 + ABZR86_RS01050 0.59 -0.3 207,477 + ABZR86_RS01050 0.59 +0.6 207,478 - ABZR86_RS01050 0.59 +0.1 207,478 - ABZR86_RS01050 0.59 -0.4 207,924 + ABZR86_RS01055 0.16 +0.3 207,924 + ABZR86_RS01055 0.16 +0.5 207,925 - ABZR86_RS01055 0.16 +1.1 207,925 - ABZR86_RS01055 0.16 -0.8 208,176 + ABZR86_RS01055 0.38 +0.8 208,176 + ABZR86_RS01055 0.38 +1.2 208,176 + ABZR86_RS01055 0.38 -0.0 208,176 + ABZR86_RS01055 0.38 -0.5 208,177 - ABZR86_RS01055 0.38 -0.0 208,177 - ABZR86_RS01055 0.38 -0.2 208,227 + ABZR86_RS01055 0.42 -0.4 208,227 + ABZR86_RS01055 0.42 +0.2 208,228 - ABZR86_RS01055 0.42 -0.1 208,228 - ABZR86_RS01055 0.42 +0.1 208,228 - ABZR86_RS01055 0.42 -0.4 208,228 - ABZR86_RS01055 0.42 +0.2 208,228 - ABZR86_RS01055 0.42 -0.4 208,248 + ABZR86_RS01055 0.44 -0.0 208,248 + ABZR86_RS01055 0.44 +0.8 208,604 - ABZR86_RS01055 0.75 +0.1
Or see this region's nucleotide sequence