Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00600

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00595 and ABZR86_RS00600 are separated by 141 nucleotidesABZR86_RS00600 and ABZR86_RS00605 are separated by 7 nucleotidesABZR86_RS00605 and ABZR86_RS00610 are separated by 110 nucleotides ABZR86_RS00595: ABZR86_RS00595 - NAD(P)/FAD-dependent oxidoreductase, at 113,240 to 114,382 _RS00595 ABZR86_RS00600: ABZR86_RS00600 - AEC family transporter, at 114,524 to 115,426 _RS00600 ABZR86_RS00605: ABZR86_RS00605 - S4 domain-containing protein, at 115,434 to 115,823 _RS00605 ABZR86_RS00610: ABZR86_RS00610 - response regulator, at 115,934 to 116,485 _RS00610 Position (kb) 114 115 116Strain fitness (log2 ratio) -1 0 1 2at 113.904 kb on + strand, within ABZR86_RS00595at 113.904 kb on + strand, within ABZR86_RS00595at 113.923 kb on - strand, within ABZR86_RS00595at 113.952 kb on + strand, within ABZR86_RS00595at 113.952 kb on + strand, within ABZR86_RS00595at 113.952 kb on + strand, within ABZR86_RS00595at 113.953 kb on - strand, within ABZR86_RS00595at 113.953 kb on - strand, within ABZR86_RS00595at 113.953 kb on - strand, within ABZR86_RS00595at 114.129 kb on + strand, within ABZR86_RS00595at 114.129 kb on + strand, within ABZR86_RS00595at 114.130 kb on - strand, within ABZR86_RS00595at 114.142 kb on - strand, within ABZR86_RS00595at 114.177 kb on + strand, within ABZR86_RS00595at 114.246 kb on + strand, within ABZR86_RS00595at 114.247 kb on - strand, within ABZR86_RS00595at 114.418 kb on - strandat 114.479 kb on + strandat 114.479 kb on + strandat 114.480 kb on - strandat 114.823 kb on + strand, within ABZR86_RS00600at 114.823 kb on + strand, within ABZR86_RS00600at 114.824 kb on - strand, within ABZR86_RS00600at 114.839 kb on + strand, within ABZR86_RS00600at 114.953 kb on + strand, within ABZR86_RS00600at 114.954 kb on - strand, within ABZR86_RS00600at 114.954 kb on - strand, within ABZR86_RS00600at 115.471 kb on + strandat 115.471 kb on + strandat 115.471 kb on + strandat 115.471 kb on + strandat 115.471 kb on + strandat 115.471 kb on + strandat 115.471 kb on + strandat 115.471 kb on + strandat 115.471 kb on + strandat 115.472 kb on - strandat 115.472 kb on - strandat 115.472 kb on - strandat 115.472 kb on - strandat 115.472 kb on - strandat 115.636 kb on + strand, within ABZR86_RS00605at 115.636 kb on + strand, within ABZR86_RS00605at 115.637 kb on - strand, within ABZR86_RS00605at 115.637 kb on - strand, within ABZR86_RS00605at 115.637 kb on - strand, within ABZR86_RS00605at 116.291 kb on + strand, within ABZR86_RS00610at 116.291 kb on + strand, within ABZR86_RS00610at 116.291 kb on + strand, within ABZR86_RS00610at 116.291 kb on + strand, within ABZR86_RS00610at 116.292 kb on - strand, within ABZR86_RS00610at 116.292 kb on - strand, within ABZR86_RS00610at 116.292 kb on - strand, within ABZR86_RS00610at 116.292 kb on - strand, within ABZR86_RS00610at 116.292 kb on - strand, within ABZR86_RS00610

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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113,904 + ABZR86_RS00595 0.58 -0.1
113,904 + ABZR86_RS00595 0.58 -0.4
113,923 - ABZR86_RS00595 0.60 +0.4
113,952 + ABZR86_RS00595 0.62 -0.6
113,952 + ABZR86_RS00595 0.62 -0.1
113,952 + ABZR86_RS00595 0.62 +0.7
113,953 - ABZR86_RS00595 0.62 -0.5
113,953 - ABZR86_RS00595 0.62 -0.9
113,953 - ABZR86_RS00595 0.62 -1.0
114,129 + ABZR86_RS00595 0.78 -0.0
114,129 + ABZR86_RS00595 0.78 +0.4
114,130 - ABZR86_RS00595 0.78 -0.4
114,142 - ABZR86_RS00595 0.79 -0.2
114,177 + ABZR86_RS00595 0.82 -0.6
114,246 + ABZR86_RS00595 0.88 -0.3
114,247 - ABZR86_RS00595 0.88 +0.4
114,418 - -0.1
114,479 + -0.2
114,479 + +1.8
114,480 - -0.4
114,823 + ABZR86_RS00600 0.33 -0.5
114,823 + ABZR86_RS00600 0.33 -0.9
114,824 - ABZR86_RS00600 0.33 -1.5
114,839 + ABZR86_RS00600 0.35 -0.4
114,953 + ABZR86_RS00600 0.48 +0.4
114,954 - ABZR86_RS00600 0.48 +0.0
114,954 - ABZR86_RS00600 0.48 +0.4
115,471 + -0.5
115,471 + +0.2
115,471 + -0.5
115,471 + -0.3
115,471 + -0.5
115,471 + -0.6
115,471 + +0.1
115,471 + -0.0
115,471 + -0.3
115,472 - -0.4
115,472 - -0.6
115,472 - -0.1
115,472 - +0.6
115,472 - -0.3
115,636 + ABZR86_RS00605 0.52 -0.2
115,636 + ABZR86_RS00605 0.52 -1.0
115,637 - ABZR86_RS00605 0.52 -0.3
115,637 - ABZR86_RS00605 0.52 -0.2
115,637 - ABZR86_RS00605 0.52 +0.1
116,291 + ABZR86_RS00610 0.65 -0.1
116,291 + ABZR86_RS00610 0.65 +0.2
116,291 + ABZR86_RS00610 0.65 -0.1
116,291 + ABZR86_RS00610 0.65 +0.4
116,292 - ABZR86_RS00610 0.65 -0.0
116,292 - ABZR86_RS00610 0.65 +0.4
116,292 - ABZR86_RS00610 0.65 +0.1
116,292 - ABZR86_RS00610 0.65 -0.2
116,292 - ABZR86_RS00610 0.65 -0.5

Or see this region's nucleotide sequence