Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3179

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3178 and DvMF_3179 are separated by 293 nucleotidesDvMF_3179 and DvMF_3180 are separated by 168 nucleotides DvMF_3178: DvMF_3178 - 6-phosphogluconolactonase (RefSeq), at 4,009,263 to 4,010,000 _3178 DvMF_3179: DvMF_3179 - OsmC family protein (RefSeq), at 4,010,294 to 4,010,773 _3179 DvMF_3180: DvMF_3180 - beta-lactamase domain protein (RefSeq), at 4,010,942 to 4,011,688 _3180 Position (kb) 4010 4011Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4009.298 kb on + strandat 4009.751 kb on + strand, within DvMF_3178at 4009.766 kb on + strand, within DvMF_3178at 4009.769 kb on - strand, within DvMF_3178at 4009.824 kb on + strand, within DvMF_3178at 4009.868 kb on + strand, within DvMF_3178at 4010.056 kb on + strandat 4010.168 kb on + strandat 4010.338 kb on - strandat 4010.413 kb on + strand, within DvMF_3179at 4010.550 kb on + strand, within DvMF_3179at 4010.911 kb on - strandat 4011.149 kb on + strand, within DvMF_3180at 4011.149 kb on + strand, within DvMF_3180at 4011.265 kb on - strand, within DvMF_3180at 4011.424 kb on - strand, within DvMF_3180at 4011.605 kb on - strand, within DvMF_3180at 4011.649 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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4,009,298 + +0.2
4,009,751 + DvMF_3178 0.66 -0.6
4,009,766 + DvMF_3178 0.68 -0.8
4,009,769 - DvMF_3178 0.69 -3.2
4,009,824 + DvMF_3178 0.76 -0.7
4,009,868 + DvMF_3178 0.82 -0.7
4,010,056 + +0.6
4,010,168 + -0.2
4,010,338 - -0.5
4,010,413 + DvMF_3179 0.25 -0.9
4,010,550 + DvMF_3179 0.53 +0.2
4,010,911 - +1.8
4,011,149 + DvMF_3180 0.28 -1.3
4,011,149 + DvMF_3180 0.28 -0.8
4,011,265 - DvMF_3180 0.43 -2.5
4,011,424 - DvMF_3180 0.65 -0.2
4,011,605 - DvMF_3180 0.89 -0.5
4,011,649 + -0.7

Or see this region's nucleotide sequence