Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2937

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2935 and DvMF_2936 are separated by 1 nucleotidesDvMF_2936 and DvMF_2937 are separated by 613 nucleotidesDvMF_2937 and DvMF_2938 overlap by 4 nucleotides DvMF_2935: DvMF_2935 - PfkB domain protein (RefSeq), at 3,706,874 to 3,707,800 _2935 DvMF_2936: DvMF_2936 - CutA1 divalent ion tolerance protein (RefSeq), at 3,707,802 to 3,708,122 _2936 DvMF_2937: DvMF_2937 - endonuclease III (RefSeq), at 3,708,736 to 3,709,581 _2937 DvMF_2938: DvMF_2938 - hypothetical protein (RefSeq), at 3,709,578 to 3,710,411 _2938 Position (kb) 3708 3709 3710Strain fitness (log2 ratio) -2 -1 0 1at 3707.800 kb on + strandat 3707.949 kb on - strand, within DvMF_2936at 3708.377 kb on + strandat 3708.385 kb on - strandat 3708.504 kb on + strandat 3708.512 kb on - strandat 3708.574 kb on + strandat 3708.574 kb on + strandat 3708.772 kb on + strandat 3708.783 kb on + strandat 3708.847 kb on + strand, within DvMF_2937at 3708.898 kb on - strand, within DvMF_2937at 3708.898 kb on - strand, within DvMF_2937at 3708.898 kb on - strand, within DvMF_2937at 3709.111 kb on + strand, within DvMF_2937at 3709.515 kb on + strandat 3709.585 kb on + strandat 3709.593 kb on - strandat 3709.659 kb on - strandat 3709.899 kb on - strand, within DvMF_2938at 3709.917 kb on - strand, within DvMF_2938at 3710.118 kb on + strand, within DvMF_2938

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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3,707,800 + -0.9
3,707,949 - DvMF_2936 0.46 -0.5
3,708,377 + -0.1
3,708,385 - +0.2
3,708,504 + -0.5
3,708,512 - -0.1
3,708,574 + -0.5
3,708,574 + -1.6
3,708,772 + -0.0
3,708,783 + -0.1
3,708,847 + DvMF_2937 0.13 -0.8
3,708,898 - DvMF_2937 0.19 -0.4
3,708,898 - DvMF_2937 0.19 -0.7
3,708,898 - DvMF_2937 0.19 -1.1
3,709,111 + DvMF_2937 0.44 -1.2
3,709,515 + -0.2
3,709,585 + -0.6
3,709,593 - -2.0
3,709,659 - -0.0
3,709,899 - DvMF_2938 0.38 -0.4
3,709,917 - DvMF_2938 0.41 -0.7
3,710,118 + DvMF_2938 0.65 -0.4

Or see this region's nucleotide sequence