Experiment: MoYLS4 with perchlorate 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2935 and DvMF_2936 are separated by 1 nucleotides DvMF_2936 and DvMF_2937 are separated by 613 nucleotides DvMF_2937 and DvMF_2938 overlap by 4 nucleotides
DvMF_2935: DvMF_2935 - PfkB domain protein (RefSeq), at 3,706,874 to 3,707,800
_2935
DvMF_2936: DvMF_2936 - CutA1 divalent ion tolerance protein (RefSeq), at 3,707,802 to 3,708,122
_2936
DvMF_2937: DvMF_2937 - endonuclease III (RefSeq), at 3,708,736 to 3,709,581
_2937
DvMF_2938: DvMF_2938 - hypothetical protein (RefSeq), at 3,709,578 to 3,710,411
_2938
Position (kb)
3708
3709
3710 Strain fitness (log2 ratio)
-2
-1
0
1 at 3707.800 kb on + strand at 3707.949 kb on - strand, within DvMF_2936 at 3708.377 kb on + strand at 3708.385 kb on - strand at 3708.504 kb on + strand at 3708.512 kb on - strand at 3708.574 kb on + strand at 3708.574 kb on + strand at 3708.772 kb on + strand at 3708.783 kb on + strand at 3708.847 kb on + strand, within DvMF_2937 at 3708.898 kb on - strand, within DvMF_2937 at 3708.898 kb on - strand, within DvMF_2937 at 3708.898 kb on - strand, within DvMF_2937 at 3709.111 kb on + strand, within DvMF_2937 at 3709.515 kb on + strand at 3709.585 kb on + strand at 3709.593 kb on - strand at 3709.659 kb on - strand at 3709.899 kb on - strand, within DvMF_2938 at 3709.917 kb on - strand, within DvMF_2938 at 3710.118 kb on + strand, within DvMF_2938
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM remove 3,707,800 + -0.9 3,707,949 - DvMF_2936 0.46 -0.5 3,708,377 + -0.1 3,708,385 - +0.2 3,708,504 + -0.5 3,708,512 - -0.1 3,708,574 + -0.5 3,708,574 + -1.6 3,708,772 + -0.0 3,708,783 + -0.1 3,708,847 + DvMF_2937 0.13 -0.8 3,708,898 - DvMF_2937 0.19 -0.4 3,708,898 - DvMF_2937 0.19 -0.7 3,708,898 - DvMF_2937 0.19 -1.1 3,709,111 + DvMF_2937 0.44 -1.2 3,709,515 + -0.2 3,709,585 + -0.6 3,709,593 - -2.0 3,709,659 - -0.0 3,709,899 - DvMF_2938 0.38 -0.4 3,709,917 - DvMF_2938 0.41 -0.7 3,710,118 + DvMF_2938 0.65 -0.4
Or see this region's nucleotide sequence