Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2684

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2683 and DvMF_2684 are separated by 62 nucleotidesDvMF_2684 and DvMF_2685 are separated by 104 nucleotides DvMF_2683: DvMF_2683 - multi-sensor hybrid histidine kinase (RefSeq), at 3,391,849 to 3,395,925 _2683 DvMF_2684: DvMF_2684 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,395,988 to 3,397,061 _2684 DvMF_2685: DvMF_2685 - extracellular solute-binding protein family 3 (RefSeq), at 3,397,166 to 3,398,032 _2685 Position (kb) 3395 3396 3397 3398Strain fitness (log2 ratio) -3 -2 -1 0 1at 3395.159 kb on + strand, within DvMF_2683at 3395.328 kb on - strand, within DvMF_2683at 3395.648 kb on - strandat 3395.977 kb on - strandat 3396.057 kb on + strandat 3396.090 kb on + strandat 3396.266 kb on + strand, within DvMF_2684at 3396.346 kb on + strand, within DvMF_2684at 3396.356 kb on + strand, within DvMF_2684at 3396.453 kb on + strand, within DvMF_2684at 3396.456 kb on - strand, within DvMF_2684at 3396.744 kb on + strand, within DvMF_2684at 3396.861 kb on - strand, within DvMF_2684at 3396.861 kb on - strand, within DvMF_2684at 3396.948 kb on + strand, within DvMF_2684at 3397.048 kb on + strandat 3397.459 kb on + strand, within DvMF_2685at 3397.571 kb on - strand, within DvMF_2685at 3397.697 kb on + strand, within DvMF_2685at 3397.710 kb on - strand, within DvMF_2685

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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3,395,159 + DvMF_2683 0.81 -0.1
3,395,328 - DvMF_2683 0.85 -0.7
3,395,648 - -0.0
3,395,977 - -0.4
3,396,057 + +0.1
3,396,090 + +0.4
3,396,266 + DvMF_2684 0.26 -0.5
3,396,346 + DvMF_2684 0.33 -0.1
3,396,356 + DvMF_2684 0.34 -1.2
3,396,453 + DvMF_2684 0.43 -2.1
3,396,456 - DvMF_2684 0.44 -0.2
3,396,744 + DvMF_2684 0.70 -0.5
3,396,861 - DvMF_2684 0.81 -0.5
3,396,861 - DvMF_2684 0.81 -0.2
3,396,948 + DvMF_2684 0.89 +0.0
3,397,048 + -0.3
3,397,459 + DvMF_2685 0.34 -3.0
3,397,571 - DvMF_2685 0.47 -0.3
3,397,697 + DvMF_2685 0.61 -0.7
3,397,710 - DvMF_2685 0.63 -0.5

Or see this region's nucleotide sequence