Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2247

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2246 and DvMF_2247 overlap by 14 nucleotidesDvMF_2247 and DvMF_2248 are separated by 311 nucleotides DvMF_2246: DvMF_2246 - transcriptional regulator, LysR family (RefSeq), at 2,820,336 to 2,821,301 _2246 DvMF_2247: DvMF_2247 - channel protein, hemolysin III family (RefSeq), at 2,821,288 to 2,821,935 _2247 DvMF_2248: DvMF_2248 - signal recognition particle-docking protein FtsY (RefSeq), at 2,822,247 to 2,823,641 _2248 Position (kb) 2821 2822Strain fitness (log2 ratio) -1 0 1at 2820.312 kb on - strandat 2820.384 kb on + strandat 2820.942 kb on - strand, within DvMF_2246at 2821.167 kb on + strand, within DvMF_2246at 2821.211 kb on + strandat 2821.256 kb on + strandat 2821.317 kb on - strandat 2821.655 kb on - strand, within DvMF_2247at 2821.904 kb on - strandat 2822.203 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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2,820,312 - -0.9
2,820,384 + -0.5
2,820,942 - DvMF_2246 0.63 +0.2
2,821,167 + DvMF_2246 0.86 -0.4
2,821,211 + +0.9
2,821,256 + -0.4
2,821,317 - -1.5
2,821,655 - DvMF_2247 0.57 -0.4
2,821,904 - +0.1
2,822,203 + -0.6

Or see this region's nucleotide sequence