Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2197

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2196 and DvMF_2197 are separated by 453 nucleotidesDvMF_2197 and DvMF_2198 are separated by 177 nucleotides DvMF_2196: DvMF_2196 - FAD linked oxidase domain protein (RefSeq), at 2,743,136 to 2,745,964 _2196 DvMF_2197: DvMF_2197 - protein of unknown function DUF805 (RefSeq), at 2,746,418 to 2,747,458 _2197 DvMF_2198: DvMF_2198 - DEAD/DEAH box helicase domain protein (RefSeq), at 2,747,636 to 2,751,232 _2198 Position (kb) 2746 2747 2748Strain fitness (log2 ratio) -1 0 1at 2745.431 kb on + strand, within DvMF_2196at 2745.431 kb on + strand, within DvMF_2196at 2745.439 kb on - strand, within DvMF_2196at 2745.439 kb on - strand, within DvMF_2196at 2745.478 kb on + strand, within DvMF_2196at 2745.486 kb on - strand, within DvMF_2196at 2745.571 kb on - strand, within DvMF_2196at 2746.105 kb on + strandat 2746.110 kb on + strandat 2746.113 kb on - strandat 2746.118 kb on - strandat 2746.271 kb on - strandat 2746.416 kb on + strandat 2746.434 kb on + strandat 2746.519 kb on + strandat 2746.885 kb on + strand, within DvMF_2197at 2747.023 kb on + strand, within DvMF_2197at 2747.109 kb on - strand, within DvMF_2197at 2747.543 kb on - strandat 2747.582 kb on + strandat 2747.886 kb on - strandat 2747.902 kb on + strandat 2747.923 kb on - strandat 2747.986 kb on + strandat 2748.268 kb on - strand, within DvMF_2198at 2748.279 kb on - strand, within DvMF_2198at 2748.325 kb on - strand, within DvMF_2198

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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2,745,431 + DvMF_2196 0.81 -0.4
2,745,431 + DvMF_2196 0.81 +0.1
2,745,439 - DvMF_2196 0.81 -0.4
2,745,439 - DvMF_2196 0.81 -0.5
2,745,478 + DvMF_2196 0.83 -0.3
2,745,486 - DvMF_2196 0.83 -0.1
2,745,571 - DvMF_2196 0.86 -0.6
2,746,105 + -0.5
2,746,110 + -0.6
2,746,113 - -0.4
2,746,118 - -0.4
2,746,271 - -0.4
2,746,416 + -0.1
2,746,434 + -1.5
2,746,519 + -0.3
2,746,885 + DvMF_2197 0.45 +0.2
2,747,023 + DvMF_2197 0.58 -0.2
2,747,109 - DvMF_2197 0.66 +0.3
2,747,543 - -0.8
2,747,582 + -0.4
2,747,886 - -0.2
2,747,902 + -0.6
2,747,923 - -0.5
2,747,986 + -0.4
2,748,268 - DvMF_2198 0.18 +0.1
2,748,279 - DvMF_2198 0.18 -0.2
2,748,325 - DvMF_2198 0.19 -0.1

Or see this region's nucleotide sequence