Experiment: MoYLS4 with perchlorate 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2108 and DvMF_2109 overlap by 4 nucleotides DvMF_2109 and DvMF_2110 are separated by 328 nucleotides
DvMF_2108: DvMF_2108 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,626,554 to 2,628,242
_2108
DvMF_2109: DvMF_2109 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,628,239 to 2,629,786
_2109
DvMF_2110: DvMF_2110 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,630,115 to 2,631,065
_2110
Position (kb)
2628
2629
2630 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2627.444 kb on - strand, within DvMF_2108 at 2627.503 kb on + strand, within DvMF_2108 at 2627.597 kb on - strand, within DvMF_2108 at 2627.654 kb on - strand, within DvMF_2108 at 2627.762 kb on + strand, within DvMF_2108 at 2627.966 kb on + strand, within DvMF_2108 at 2628.037 kb on + strand, within DvMF_2108 at 2628.316 kb on - strand at 2628.511 kb on + strand, within DvMF_2109 at 2629.104 kb on - strand, within DvMF_2109 at 2629.174 kb on - strand, within DvMF_2109 at 2629.240 kb on + strand, within DvMF_2109 at 2629.353 kb on + strand, within DvMF_2109 at 2629.434 kb on + strand, within DvMF_2109 at 2629.435 kb on - strand, within DvMF_2109 at 2629.781 kb on + strand at 2629.783 kb on + strand at 2629.985 kb on - strand at 2630.056 kb on + strand at 2630.193 kb on - strand at 2630.431 kb on - strand, within DvMF_2110 at 2630.714 kb on - strand, within DvMF_2110
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM remove 2,627,444 - DvMF_2108 0.53 +3.0 2,627,503 + DvMF_2108 0.56 +2.8 2,627,597 - DvMF_2108 0.62 +2.7 2,627,654 - DvMF_2108 0.65 +3.1 2,627,762 + DvMF_2108 0.72 +2.4 2,627,966 + DvMF_2108 0.84 +2.5 2,628,037 + DvMF_2108 0.88 +2.8 2,628,316 - +3.0 2,628,511 + DvMF_2109 0.18 +2.9 2,629,104 - DvMF_2109 0.56 +2.8 2,629,174 - DvMF_2109 0.60 +1.8 2,629,240 + DvMF_2109 0.65 +3.0 2,629,353 + DvMF_2109 0.72 +3.3 2,629,434 + DvMF_2109 0.77 +3.1 2,629,435 - DvMF_2109 0.77 +3.1 2,629,781 + -0.7 2,629,783 + -0.7 2,629,985 - -0.0 2,630,056 + -0.3 2,630,193 - -0.0 2,630,431 - DvMF_2110 0.33 -0.2 2,630,714 - DvMF_2110 0.63 -1.9
Or see this region's nucleotide sequence