Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2109

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2108 and DvMF_2109 overlap by 4 nucleotidesDvMF_2109 and DvMF_2110 are separated by 328 nucleotides DvMF_2108: DvMF_2108 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,626,554 to 2,628,242 _2108 DvMF_2109: DvMF_2109 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,628,239 to 2,629,786 _2109 DvMF_2110: DvMF_2110 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,630,115 to 2,631,065 _2110 Position (kb) 2628 2629 2630Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2627.444 kb on - strand, within DvMF_2108at 2627.503 kb on + strand, within DvMF_2108at 2627.597 kb on - strand, within DvMF_2108at 2627.654 kb on - strand, within DvMF_2108at 2627.762 kb on + strand, within DvMF_2108at 2627.966 kb on + strand, within DvMF_2108at 2628.037 kb on + strand, within DvMF_2108at 2628.316 kb on - strandat 2628.511 kb on + strand, within DvMF_2109at 2629.104 kb on - strand, within DvMF_2109at 2629.174 kb on - strand, within DvMF_2109at 2629.240 kb on + strand, within DvMF_2109at 2629.353 kb on + strand, within DvMF_2109at 2629.434 kb on + strand, within DvMF_2109at 2629.435 kb on - strand, within DvMF_2109at 2629.781 kb on + strandat 2629.783 kb on + strandat 2629.985 kb on - strandat 2630.056 kb on + strandat 2630.193 kb on - strandat 2630.431 kb on - strand, within DvMF_2110at 2630.714 kb on - strand, within DvMF_2110

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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2,627,444 - DvMF_2108 0.53 +3.0
2,627,503 + DvMF_2108 0.56 +2.8
2,627,597 - DvMF_2108 0.62 +2.7
2,627,654 - DvMF_2108 0.65 +3.1
2,627,762 + DvMF_2108 0.72 +2.4
2,627,966 + DvMF_2108 0.84 +2.5
2,628,037 + DvMF_2108 0.88 +2.8
2,628,316 - +3.0
2,628,511 + DvMF_2109 0.18 +2.9
2,629,104 - DvMF_2109 0.56 +2.8
2,629,174 - DvMF_2109 0.60 +1.8
2,629,240 + DvMF_2109 0.65 +3.0
2,629,353 + DvMF_2109 0.72 +3.3
2,629,434 + DvMF_2109 0.77 +3.1
2,629,435 - DvMF_2109 0.77 +3.1
2,629,781 + -0.7
2,629,783 + -0.7
2,629,985 - -0.0
2,630,056 + -0.3
2,630,193 - -0.0
2,630,431 - DvMF_2110 0.33 -0.2
2,630,714 - DvMF_2110 0.63 -1.9

Or see this region's nucleotide sequence