Experiment: MoYLS4 with perchlorate 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2105 and DvMF_2106 are separated by 90 nucleotides DvMF_2106 and DvMF_2107 are separated by 283 nucleotides DvMF_2107 and DvMF_2108 overlap by 13 nucleotides
DvMF_2105: DvMF_2105 - hypothetical protein (RefSeq), at 2,623,089 to 2,623,646
_2105
DvMF_2106: DvMF_2106 - hypothetical protein (RefSeq), at 2,623,737 to 2,623,976
_2106
DvMF_2107: DvMF_2107 - response regulator receiver protein (RefSeq), at 2,624,260 to 2,626,566
_2107
DvMF_2108: DvMF_2108 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,626,554 to 2,628,242
_2108
Position (kb)
2624
2625
2626
2627 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 2623.453 kb on + strand, within DvMF_2105 at 2623.707 kb on - strand at 2623.824 kb on + strand, within DvMF_2106 at 2623.912 kb on - strand, within DvMF_2106 at 2624.432 kb on + strand at 2624.432 kb on + strand at 2624.435 kb on - strand at 2624.442 kb on + strand at 2624.555 kb on + strand, within DvMF_2107 at 2624.562 kb on - strand, within DvMF_2107 at 2624.603 kb on + strand, within DvMF_2107 at 2624.624 kb on - strand, within DvMF_2107 at 2624.894 kb on + strand, within DvMF_2107 at 2624.938 kb on + strand, within DvMF_2107 at 2624.956 kb on + strand, within DvMF_2107 at 2624.956 kb on + strand, within DvMF_2107 at 2624.974 kb on + strand, within DvMF_2107 at 2625.085 kb on + strand, within DvMF_2107 at 2625.093 kb on - strand, within DvMF_2107 at 2625.099 kb on + strand, within DvMF_2107 at 2625.162 kb on - strand, within DvMF_2107 at 2625.167 kb on + strand, within DvMF_2107 at 2625.284 kb on + strand, within DvMF_2107 at 2625.332 kb on - strand, within DvMF_2107 at 2625.390 kb on - strand, within DvMF_2107 at 2625.456 kb on - strand, within DvMF_2107 at 2625.907 kb on + strand, within DvMF_2107 at 2625.950 kb on + strand, within DvMF_2107 at 2626.096 kb on - strand, within DvMF_2107 at 2626.249 kb on - strand, within DvMF_2107 at 2626.669 kb on - strand at 2626.685 kb on + strand at 2626.763 kb on + strand, within DvMF_2108 at 2626.862 kb on + strand, within DvMF_2108 at 2626.864 kb on + strand, within DvMF_2108 at 2627.065 kb on + strand, within DvMF_2108 at 2627.214 kb on + strand, within DvMF_2108 at 2627.214 kb on + strand, within DvMF_2108 at 2627.224 kb on + strand, within DvMF_2108 at 2627.444 kb on - strand, within DvMF_2108 at 2627.503 kb on + strand, within DvMF_2108
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM remove 2,623,453 + DvMF_2105 0.65 -0.0 2,623,707 - +0.8 2,623,824 + DvMF_2106 0.36 -0.6 2,623,912 - DvMF_2106 0.73 +2.1 2,624,432 + +2.4 2,624,432 + +2.5 2,624,435 - +2.2 2,624,442 + +1.6 2,624,555 + DvMF_2107 0.13 +2.5 2,624,562 - DvMF_2107 0.13 +2.9 2,624,603 + DvMF_2107 0.15 +2.6 2,624,624 - DvMF_2107 0.16 +2.8 2,624,894 + DvMF_2107 0.27 +2.8 2,624,938 + DvMF_2107 0.29 +2.3 2,624,956 + DvMF_2107 0.30 +1.4 2,624,956 + DvMF_2107 0.30 +1.6 2,624,974 + DvMF_2107 0.31 +2.1 2,625,085 + DvMF_2107 0.36 +2.1 2,625,093 - DvMF_2107 0.36 +2.4 2,625,099 + DvMF_2107 0.36 +0.7 2,625,162 - DvMF_2107 0.39 +3.4 2,625,167 + DvMF_2107 0.39 +2.8 2,625,284 + DvMF_2107 0.44 +2.7 2,625,332 - DvMF_2107 0.46 +2.8 2,625,390 - DvMF_2107 0.49 +2.9 2,625,456 - DvMF_2107 0.52 +2.8 2,625,907 + DvMF_2107 0.71 +0.7 2,625,950 + DvMF_2107 0.73 +2.0 2,626,096 - DvMF_2107 0.80 +2.3 2,626,249 - DvMF_2107 0.86 +2.8 2,626,669 - +2.7 2,626,685 + +3.0 2,626,763 + DvMF_2108 0.12 +2.9 2,626,862 + DvMF_2108 0.18 +2.7 2,626,864 + DvMF_2108 0.18 +2.4 2,627,065 + DvMF_2108 0.30 +5.3 2,627,214 + DvMF_2108 0.39 +2.7 2,627,214 + DvMF_2108 0.39 +3.0 2,627,224 + DvMF_2108 0.40 +2.9 2,627,444 - DvMF_2108 0.53 +3.0 2,627,503 + DvMF_2108 0.56 +2.8
Or see this region's nucleotide sequence