Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2107

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2105 and DvMF_2106 are separated by 90 nucleotidesDvMF_2106 and DvMF_2107 are separated by 283 nucleotidesDvMF_2107 and DvMF_2108 overlap by 13 nucleotides DvMF_2105: DvMF_2105 - hypothetical protein (RefSeq), at 2,623,089 to 2,623,646 _2105 DvMF_2106: DvMF_2106 - hypothetical protein (RefSeq), at 2,623,737 to 2,623,976 _2106 DvMF_2107: DvMF_2107 - response regulator receiver protein (RefSeq), at 2,624,260 to 2,626,566 _2107 DvMF_2108: DvMF_2108 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,626,554 to 2,628,242 _2108 Position (kb) 2624 2625 2626 2627Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2623.453 kb on + strand, within DvMF_2105at 2623.707 kb on - strandat 2623.824 kb on + strand, within DvMF_2106at 2623.912 kb on - strand, within DvMF_2106at 2624.432 kb on + strandat 2624.432 kb on + strandat 2624.435 kb on - strandat 2624.442 kb on + strandat 2624.555 kb on + strand, within DvMF_2107at 2624.562 kb on - strand, within DvMF_2107at 2624.603 kb on + strand, within DvMF_2107at 2624.624 kb on - strand, within DvMF_2107at 2624.894 kb on + strand, within DvMF_2107at 2624.938 kb on + strand, within DvMF_2107at 2624.956 kb on + strand, within DvMF_2107at 2624.956 kb on + strand, within DvMF_2107at 2624.974 kb on + strand, within DvMF_2107at 2625.085 kb on + strand, within DvMF_2107at 2625.093 kb on - strand, within DvMF_2107at 2625.099 kb on + strand, within DvMF_2107at 2625.162 kb on - strand, within DvMF_2107at 2625.167 kb on + strand, within DvMF_2107at 2625.284 kb on + strand, within DvMF_2107at 2625.332 kb on - strand, within DvMF_2107at 2625.390 kb on - strand, within DvMF_2107at 2625.456 kb on - strand, within DvMF_2107at 2625.907 kb on + strand, within DvMF_2107at 2625.950 kb on + strand, within DvMF_2107at 2626.096 kb on - strand, within DvMF_2107at 2626.249 kb on - strand, within DvMF_2107at 2626.669 kb on - strandat 2626.685 kb on + strandat 2626.763 kb on + strand, within DvMF_2108at 2626.862 kb on + strand, within DvMF_2108at 2626.864 kb on + strand, within DvMF_2108at 2627.065 kb on + strand, within DvMF_2108at 2627.214 kb on + strand, within DvMF_2108at 2627.214 kb on + strand, within DvMF_2108at 2627.224 kb on + strand, within DvMF_2108at 2627.444 kb on - strand, within DvMF_2108at 2627.503 kb on + strand, within DvMF_2108

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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2,623,453 + DvMF_2105 0.65 -0.0
2,623,707 - +0.8
2,623,824 + DvMF_2106 0.36 -0.6
2,623,912 - DvMF_2106 0.73 +2.1
2,624,432 + +2.4
2,624,432 + +2.5
2,624,435 - +2.2
2,624,442 + +1.6
2,624,555 + DvMF_2107 0.13 +2.5
2,624,562 - DvMF_2107 0.13 +2.9
2,624,603 + DvMF_2107 0.15 +2.6
2,624,624 - DvMF_2107 0.16 +2.8
2,624,894 + DvMF_2107 0.27 +2.8
2,624,938 + DvMF_2107 0.29 +2.3
2,624,956 + DvMF_2107 0.30 +1.4
2,624,956 + DvMF_2107 0.30 +1.6
2,624,974 + DvMF_2107 0.31 +2.1
2,625,085 + DvMF_2107 0.36 +2.1
2,625,093 - DvMF_2107 0.36 +2.4
2,625,099 + DvMF_2107 0.36 +0.7
2,625,162 - DvMF_2107 0.39 +3.4
2,625,167 + DvMF_2107 0.39 +2.8
2,625,284 + DvMF_2107 0.44 +2.7
2,625,332 - DvMF_2107 0.46 +2.8
2,625,390 - DvMF_2107 0.49 +2.9
2,625,456 - DvMF_2107 0.52 +2.8
2,625,907 + DvMF_2107 0.71 +0.7
2,625,950 + DvMF_2107 0.73 +2.0
2,626,096 - DvMF_2107 0.80 +2.3
2,626,249 - DvMF_2107 0.86 +2.8
2,626,669 - +2.7
2,626,685 + +3.0
2,626,763 + DvMF_2108 0.12 +2.9
2,626,862 + DvMF_2108 0.18 +2.7
2,626,864 + DvMF_2108 0.18 +2.4
2,627,065 + DvMF_2108 0.30 +5.3
2,627,214 + DvMF_2108 0.39 +2.7
2,627,214 + DvMF_2108 0.39 +3.0
2,627,224 + DvMF_2108 0.40 +2.9
2,627,444 - DvMF_2108 0.53 +3.0
2,627,503 + DvMF_2108 0.56 +2.8

Or see this region's nucleotide sequence