Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2098

Experiment: MoYLS4 with perchlorate 12.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2097 and DvMF_2098 are separated by 280 nucleotidesDvMF_2098 and DvMF_2099 are separated by 130 nucleotides DvMF_2097: DvMF_2097 - NADPH-dependent FMN reductase (RefSeq), at 2,613,487 to 2,614,197 _2097 DvMF_2098: DvMF_2098 - major facilitator superfamily MFS_1 (RefSeq), at 2,614,478 to 2,615,878 _2098 DvMF_2099: DvMF_2099 - glutamine synthetase, type I (RefSeq), at 2,616,009 to 2,617,352 _2099 Position (kb) 2614 2615 2616Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2613.541 kb on - strandat 2613.543 kb on + strandat 2613.718 kb on - strand, within DvMF_2097at 2614.104 kb on - strand, within DvMF_2097at 2614.199 kb on - strandat 2614.206 kb on + strandat 2614.232 kb on - strandat 2614.241 kb on - strandat 2614.328 kb on - strandat 2614.534 kb on - strandat 2614.712 kb on + strand, within DvMF_2098at 2614.795 kb on + strand, within DvMF_2098at 2614.803 kb on - strand, within DvMF_2098at 2614.803 kb on - strand, within DvMF_2098at 2615.104 kb on + strand, within DvMF_2098at 2615.137 kb on - strand, within DvMF_2098at 2615.199 kb on + strand, within DvMF_2098at 2615.505 kb on + strand, within DvMF_2098at 2615.540 kb on - strand, within DvMF_2098at 2615.570 kb on + strand, within DvMF_2098at 2615.674 kb on + strand, within DvMF_2098at 2615.682 kb on - strand, within DvMF_2098at 2615.738 kb on - strand, within DvMF_2098at 2615.805 kb on + strandat 2616.247 kb on - strand, within DvMF_2099at 2616.252 kb on - strand, within DvMF_2099at 2616.252 kb on - strand, within DvMF_2099at 2616.432 kb on - strand, within DvMF_2099at 2616.666 kb on + strand, within DvMF_2099at 2616.715 kb on + strand, within DvMF_2099at 2616.723 kb on - strand, within DvMF_2099at 2616.735 kb on + strand, within DvMF_2099

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
remove
2,613,541 - -0.7
2,613,543 + -0.4
2,613,718 - DvMF_2097 0.32 -1.5
2,614,104 - DvMF_2097 0.87 -0.7
2,614,199 - -0.8
2,614,206 + -1.0
2,614,232 - +0.3
2,614,241 - -1.8
2,614,328 - +0.1
2,614,534 - -1.3
2,614,712 + DvMF_2098 0.17 +1.2
2,614,795 + DvMF_2098 0.23 -0.5
2,614,803 - DvMF_2098 0.23 -0.8
2,614,803 - DvMF_2098 0.23 +0.1
2,615,104 + DvMF_2098 0.45 -1.5
2,615,137 - DvMF_2098 0.47 -1.0
2,615,199 + DvMF_2098 0.51 -0.9
2,615,505 + DvMF_2098 0.73 -0.8
2,615,540 - DvMF_2098 0.76 -0.3
2,615,570 + DvMF_2098 0.78 +0.3
2,615,674 + DvMF_2098 0.85 -1.5
2,615,682 - DvMF_2098 0.86 -0.6
2,615,738 - DvMF_2098 0.90 -0.8
2,615,805 + -0.9
2,616,247 - DvMF_2099 0.18 -2.3
2,616,252 - DvMF_2099 0.18 -2.0
2,616,252 - DvMF_2099 0.18 -1.7
2,616,432 - DvMF_2099 0.31 -3.1
2,616,666 + DvMF_2099 0.49 -0.2
2,616,715 + DvMF_2099 0.53 -1.5
2,616,723 - DvMF_2099 0.53 -1.4
2,616,735 + DvMF_2099 0.54 -4.2

Or see this region's nucleotide sequence