Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2030

Experiment: MoYLS4 with perchlorate 12.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2028 and DvMF_2029 are separated by 302 nucleotidesDvMF_2029 and DvMF_2030 are separated by 265 nucleotidesDvMF_2030 and DvMF_2031 are separated by 586 nucleotides DvMF_2028: DvMF_2028 - NLP/P60 protein (RefSeq), at 2,513,208 to 2,513,909 _2028 DvMF_2029: DvMF_2029 - histone family protein DNA-binding protein (RefSeq), at 2,514,212 to 2,514,499 _2029 DvMF_2030: DvMF_2030 - MerR family transcriptional regulator (RefSeq), at 2,514,765 to 2,515,484 _2030 DvMF_2031: DvMF_2031 - ribonucleotide-diphosphate reductase subunit alpha (RefSeq), at 2,516,071 to 2,518,383 _2031 Position (kb) 2514 2515 2516Strain fitness (log2 ratio) -2 -1 0 1at 2513.788 kb on + strand, within DvMF_2028at 2513.903 kb on + strandat 2514.048 kb on - strandat 2514.050 kb on + strandat 2514.187 kb on - strandat 2514.558 kb on + strandat 2514.697 kb on + strandat 2514.981 kb on + strand, within DvMF_2030at 2515.197 kb on + strand, within DvMF_2030at 2515.212 kb on - strand, within DvMF_2030at 2515.432 kb on + strandat 2515.595 kb on + strandat 2515.901 kb on + strandat 2516.004 kb on - strandat 2516.130 kb on - strandat 2516.140 kb on - strandat 2516.226 kb on + strandat 2516.234 kb on - strandat 2516.296 kb on + strandat 2516.351 kb on + strand, within DvMF_2031at 2516.359 kb on - strand, within DvMF_2031at 2516.397 kb on - strand, within DvMF_2031at 2516.399 kb on + strand, within DvMF_2031at 2516.482 kb on + strand, within DvMF_2031

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
remove
2,513,788 + DvMF_2028 0.83 -1.2
2,513,903 + -0.2
2,514,048 - -0.5
2,514,050 + -0.5
2,514,187 - -1.0
2,514,558 + -0.9
2,514,697 + -0.6
2,514,981 + DvMF_2030 0.30 -0.3
2,515,197 + DvMF_2030 0.60 -0.2
2,515,212 - DvMF_2030 0.62 -0.9
2,515,432 + -1.6
2,515,595 + -0.1
2,515,901 + -0.2
2,516,004 - -0.4
2,516,130 - -2.6
2,516,140 - +0.2
2,516,226 + -0.4
2,516,234 - -1.1
2,516,296 + -0.7
2,516,351 + DvMF_2031 0.12 -0.9
2,516,359 - DvMF_2031 0.12 -1.3
2,516,397 - DvMF_2031 0.14 -0.6
2,516,399 + DvMF_2031 0.14 +0.2
2,516,482 + DvMF_2031 0.18 -0.4

Or see this region's nucleotide sequence