Experiment: MoYLS4 with perchlorate 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2009 and DvMF_2010 are separated by 243 nucleotides DvMF_2010 and DvMF_2011 are separated by 30 nucleotides DvMF_2011 and DvMF_2012 overlap by 47 nucleotides DvMF_2012 and DvMF_2013 are separated by 104 nucleotides
DvMF_2009: DvMF_2009 - flagellar basal body-associated protein FliL (RefSeq), at 2,488,545 to 2,489,330
_2009
DvMF_2010: DvMF_2010 - response regulator receiver protein (RefSeq), at 2,489,574 to 2,489,954
_2010
DvMF_2011: DvMF_2011 - RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq), at 2,489,985 to 2,490,782
_2011
DvMF_2012: DvMF_2012 - Cobyrinic acid ac-diamide synthase (RefSeq), at 2,490,736 to 2,491,551
_2012
DvMF_2013: DvMF_2013 - flagellar biosynthesis protein FlhF, putative (RefSeq), at 2,491,656 to 2,492,915
_2013
Position (kb)
2489
2490
2491 Strain fitness (log2 ratio)
-2
-1
0
1 at 2489.098 kb on - strand, within DvMF_2009 at 2489.105 kb on - strand, within DvMF_2009 at 2489.317 kb on + strand at 2489.391 kb on - strand at 2489.624 kb on + strand, within DvMF_2010 at 2489.970 kb on - strand at 2490.560 kb on + strand, within DvMF_2011 at 2490.657 kb on + strand, within DvMF_2011 at 2491.654 kb on + strand at 2491.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM remove 2,489,098 - DvMF_2009 0.70 +0.4 2,489,105 - DvMF_2009 0.71 -0.7 2,489,317 + -0.0 2,489,391 - -0.8 2,489,624 + DvMF_2010 0.13 -1.6 2,489,970 - -0.3 2,490,560 + DvMF_2011 0.72 -2.5 2,490,657 + DvMF_2011 0.84 -1.9 2,491,654 + -1.7 2,491,662 - +0.1
Or see this region's nucleotide sequence