Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2010

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2009 and DvMF_2010 are separated by 243 nucleotidesDvMF_2010 and DvMF_2011 are separated by 30 nucleotidesDvMF_2011 and DvMF_2012 overlap by 47 nucleotides DvMF_2009: DvMF_2009 - flagellar basal body-associated protein FliL (RefSeq), at 2,488,545 to 2,489,330 _2009 DvMF_2010: DvMF_2010 - response regulator receiver protein (RefSeq), at 2,489,574 to 2,489,954 _2010 DvMF_2011: DvMF_2011 - RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq), at 2,489,985 to 2,490,782 _2011 DvMF_2012: DvMF_2012 - Cobyrinic acid ac-diamide synthase (RefSeq), at 2,490,736 to 2,491,551 _2012 Position (kb) 2489 2490Strain fitness (log2 ratio) -2 -1 0 1at 2488.679 kb on - strand, within DvMF_2009at 2488.689 kb on + strand, within DvMF_2009at 2488.806 kb on + strand, within DvMF_2009at 2488.819 kb on - strand, within DvMF_2009at 2488.860 kb on - strand, within DvMF_2009at 2488.910 kb on - strand, within DvMF_2009at 2489.098 kb on - strand, within DvMF_2009at 2489.105 kb on - strand, within DvMF_2009at 2489.317 kb on + strandat 2489.391 kb on - strandat 2489.624 kb on + strand, within DvMF_2010at 2489.970 kb on - strandat 2490.560 kb on + strand, within DvMF_2011at 2490.657 kb on + strand, within DvMF_2011

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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2,488,679 - DvMF_2009 0.17 +0.5
2,488,689 + DvMF_2009 0.18 +0.6
2,488,806 + DvMF_2009 0.33 +0.3
2,488,819 - DvMF_2009 0.35 +0.3
2,488,860 - DvMF_2009 0.40 +0.5
2,488,910 - DvMF_2009 0.46 +0.5
2,489,098 - DvMF_2009 0.70 +0.4
2,489,105 - DvMF_2009 0.71 -0.7
2,489,317 + -0.0
2,489,391 - -0.8
2,489,624 + DvMF_2010 0.13 -1.6
2,489,970 - -0.3
2,490,560 + DvMF_2011 0.72 -2.5
2,490,657 + DvMF_2011 0.84 -1.9

Or see this region's nucleotide sequence