Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_R0051

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1883 and DvMF_R0051 are separated by 570 nucleotidesDvMF_R0051 and DvMF_1884 are separated by 448 nucleotides DvMF_1883: DvMF_1883 - acetolactate synthase catalytic subunit (RefSeq), at 2,318,251 to 2,320,098 _1883 DvMF_R0051: DvMF_R0051 - tRNA-Thr (RefSeq), at 2,320,669 to 2,320,744 _R0051 DvMF_1884: DvMF_1884 - type IV pilus assembly PilZ (RefSeq), at 2,321,193 to 2,321,537 _1884 Position (kb) 2320 2321Strain fitness (log2 ratio) -1 0 1at 2319.699 kb on + strand, within DvMF_1883at 2320.092 kb on - strandat 2320.137 kb on - strandat 2320.618 kb on + strandat 2320.729 kb on - strand, within DvMF_R0051at 2320.729 kb on - strand, within DvMF_R0051at 2320.975 kb on + strandat 2321.294 kb on - strand, within DvMF_1884at 2321.358 kb on + strand, within DvMF_1884at 2321.358 kb on + strand, within DvMF_1884at 2321.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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2,319,699 + DvMF_1883 0.78 +0.5
2,320,092 - -0.6
2,320,137 - -1.0
2,320,618 + -1.3
2,320,729 - DvMF_R0051 0.79 -0.4
2,320,729 - DvMF_R0051 0.79 -1.7
2,320,975 + -1.4
2,321,294 - DvMF_1884 0.29 +1.2
2,321,358 + DvMF_1884 0.48 -0.9
2,321,358 + DvMF_1884 0.48 -0.1
2,321,726 - -0.0

Or see this region's nucleotide sequence